Variant report

Variant	rs12343924
Chromosome Location	chr9:73540447-73540448
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10116690	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10120894	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10123027	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12336978	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12342244	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12347867	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs28697055	0.83[EUR][1000 genomes]
rs56226184	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73647180	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73647181	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1043383	chr9:73517062-73556679	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73536600-73541600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:73540000-73540800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:73540200-73540600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:73540200-73540600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:73540200-73541200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:73540200-73542000	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr9:73540200-73545200	Weak transcription	Aorta	Aorta
8	chr9:73540400-73548200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:73540400-73550800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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