Variant report

Variant	rs73647181
Chromosome Location	chr9:73536765-73536766
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10116690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10120894	0.91[EUR][1000 genomes]
rs10123027	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12336978	0.89[EUR][1000 genomes]
rs12342244	0.88[EUR][1000 genomes]
rs12343924	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12344810	0.80[AMR][1000 genomes]
rs12347867	0.89[EUR][1000 genomes]
rs3010420	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56226184	0.90[EUR][1000 genomes]
rs73647180	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1043383	chr9:73517062-73556679	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73529600-73539800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:73530000-73539400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr9:73535400-73536800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr9:73535800-73536800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:73535800-73537000	Enhancers	NHDF-Ad	bronchial
6	chr9:73535800-73539000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:73536000-73536800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr9:73536000-73536800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:73536000-73536800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr9:73536000-73536800	Enhancers	NHEK	skin
11	chr9:73536000-73538000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:73536200-73536800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:73536400-73539000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:73536600-73536800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:73536600-73536800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:73536600-73538000	Weak transcription	Osteobl	bone
17	chr9:73536600-73538200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:73536600-73538400	Weak transcription	NH-A	brain
19	chr9:73536600-73539000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:73536600-73539000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:73536600-73539600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr9:73536600-73539800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr9:73536600-73541600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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