Variant report

Variant	rs12348023
Chromosome Location	chr9:13494652-13494653
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10119562	0.85[AFR][1000 genomes]
rs10124485	0.85[AFR][1000 genomes]
rs13284661	1.00[ASN][1000 genomes]
rs13293585	1.00[ASN][1000 genomes]
rs34161313	1.00[ASN][1000 genomes]
rs713497	1.00[ASN][1000 genomes]
rs71507376	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1016178	chr9:13486352-13502124	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	esv2761501	chr9:13486364-13504924	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13488200-13495000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr9:13489800-13495000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr9:13492600-13495200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr9:13492800-13495000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr9:13493000-13526800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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