Variant report

Variant	rs10124485
Chromosome Location	chr9:13488344-13488345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10114185	0.83[AFR][1000 genomes]
rs10119562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10120898	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10961060	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10961061	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10961062	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10961063	1.00[AMR][1000 genomes]
rs10961064	0.83[AFR][1000 genomes]
rs10961066	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10961067	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11506362	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12341780	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12348023	0.85[AFR][1000 genomes]
rs12353374	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13440025	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13440030	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13440033	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13440173	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13440328	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412169	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412170	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412172	0.83[AFR][1000 genomes]
rs73412173	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73414120	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1016178	chr9:13486352-13502124	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	esv2761501	chr9:13486364-13504924	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13477800-13491800	Weak transcription	Right Ventricle	heart
2	chr9:13481000-13490000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr9:13481000-13491800	Weak transcription	Pancreas	Pancrea
4	chr9:13484600-13491400	Weak transcription	Aorta	Aorta
5	chr9:13484600-13491800	Weak transcription	Left Ventricle	heart
6	chr9:13484600-13493600	Weak transcription	Right Atrium	heart
7	chr9:13485200-13492000	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:13485600-13489000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:13485600-13490600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:13486200-13490200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:13487200-13488800	Enhancers	HMEC	breast
12	chr9:13487200-13489000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:13487200-13490000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:13487600-13489800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr9:13487800-13489200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:13488000-13488800	Enhancers	Fetal Heart	heart
17	chr9:13488200-13490000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr9:13488200-13490200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr9:13488200-13495000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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