Variant report

Variant	rs10961060
Chromosome Location	chr9:13465339-13465340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10114185	1.00[AFR][1000 genomes]
rs10119562	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10120898	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10124485	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10961061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10961062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10961063	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10961064	1.00[AFR][1000 genomes]
rs10961066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10961067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11506362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12341780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12353374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13440025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13440030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13440033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13440173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13440328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412172	1.00[AFR][1000 genomes]
rs73412173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73414120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13456000-13467400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:13465200-13465800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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