Variant report
| Variant | rs10961064 |
|---|---|
| Chromosome Location | chr9:13465860-13465861 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10114185 | 1.00[AFR][1000 genomes] |
| rs10119562 | 0.83[AFR][1000 genomes] |
| rs10120898 | 0.91[AFR][1000 genomes] |
| rs10124485 | 0.83[AFR][1000 genomes] |
| rs10961060 | 1.00[AFR][1000 genomes] |
| rs10961061 | 1.00[AFR][1000 genomes] |
| rs10961062 | 1.00[AFR][1000 genomes] |
| rs10961063 | 0.91[AFR][1000 genomes] |
| rs10961066 | 1.00[AFR][1000 genomes] |
| rs10961067 | 1.00[AFR][1000 genomes] |
| rs11506362 | 1.00[AFR][1000 genomes] |
| rs12341780 | 1.00[AFR][1000 genomes] |
| rs12353374 | 1.00[AFR][1000 genomes] |
| rs13440025 | 1.00[AFR][1000 genomes] |
| rs13440030 | 1.00[AFR][1000 genomes] |
| rs13440033 | 1.00[AFR][1000 genomes] |
| rs13440173 | 1.00[AFR][1000 genomes] |
| rs13440328 | 1.00[AFR][1000 genomes] |
| rs73412169 | 1.00[AFR][1000 genomes] |
| rs73412170 | 1.00[AFR][1000 genomes] |
| rs73412172 | 1.00[AFR][1000 genomes] |
| rs73412173 | 1.00[AFR][1000 genomes] |
| rs73414120 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv892578 | chr9:12942956-13485035 | Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv831515 | chr9:13333205-13517308 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:13456000-13467400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
