Variant report

Variant	rs1234844
Chromosome Location	chr6:29452136-29452137
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1233480	0.84[EUR][1000 genomes]
rs1233493	1.00[EUR][1000 genomes]
rs1233494	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2023463	1.00[EUR][1000 genomes]
rs2143668	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2523431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2523432	0.90[EUR][1000 genomes]
rs2523443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2746149	1.00[EUR][1000 genomes]
rs2746150	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3094569	0.87[EUR][1000 genomes]
rs404240	0.89[EUR][1000 genomes]
rs408623	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv883528	chr6:29447724-29494897	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1234844	ZFP57	Cis_1M	lymphoblastoid	RTeQTL
rs1234844	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL
rs1234844	BTN3A2///BTN3A3	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29451200-29452200	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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