Variant report

Variant	rs12349742
Chromosome Location	chr9:98619980-98619981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr9:98619173-98620052	SK-N-SH	brain:	n/a	n/a
2	FOS	chr9:98619399-98620012	Hela-S3	cervix:	n/a	chr9:98619668-98619676
3	RELA	chr9:98619913-98620712	GM12891	blood:	n/a	n/a
4	JUND	chr9:98619433-98620002	Hela-S3	cervix:	n/a	chr9:98619668-98619676
5	CEBPB	chr9:98619384-98619987	Hela-S3	cervix:	n/a	n/a
6	TCF12	chr9:98618690-98620085	SK-N-SH	brain:	n/a	n/a
7	JUND	chr9:98619249-98620036	SK-N-SH	brain:	n/a	chr9:98619668-98619676
8	MTA3	chr9:98619860-98620888	GM12878	blood:	n/a	n/a
9	RELA	chr9:98619941-98620726	GM10847	blood:	n/a	n/a
10	STAT1	chr9:98619234-98620225	Hela-S3	cervix:	n/a	chr9:98619473-98619485 chr9:98619724-98619736
11	JUND	chr9:98618615-98620101	SK-N-SH	brain:	n/a	chr9:98619668-98619676
12	FOSL2	chr9:98619221-98619997	SK-N-SH	brain:	n/a	chr9:98619668-98619676
13	SPI1	chr9:98619838-98620902	GM12878	blood:	n/a	chr9:98619973-98619986
14	GATA3	chr9:98618186-98619984	SK-N-SH	brain:	n/a	chr9:98618252-98618262 chr9:98618253-98618262 chr9:98618499-98618509
15	STAT3	chr9:98619420-98620063	MCF10A-Er-Src	breast:	n/a	chr9:98619473-98619485 chr9:98619724-98619736
16	STAT3	chr9:98619587-98620080	MCF10A-Er-Src	breast:	n/a	chr9:98619724-98619736
17	GATA3	chr9:98619111-98620024	MCF-7	breast:	n/a	n/a
18	RELA	chr9:98619768-98620773	GM18505	blood:	n/a	n/a
19	STAT3	chr9:98619440-98620047	MCF10A-Er-Src	breast:	n/a	chr9:98619473-98619485 chr9:98619724-98619736
20	JUND	chr9:98619159-98620032	SK-N-SH	brain:	n/a	chr9:98619668-98619676
21	POLR2A	chr9:98619706-98620155	MCF10A-Er-Src	breast:	n/a	n/a
22	RELA	chr9:98619926-98620706	GM19099	blood:	n/a	n/a
23	STAT3	chr9:98619430-98620037	MCF10A-Er-Src	breast:	n/a	chr9:98619473-98619485 chr9:98619724-98619736
24	TCF12	chr9:98618751-98620049	SK-N-SH	brain:	n/a	n/a
25	NFYA	chr9:98619481-98620035	Hela-S3	cervix:	n/a	n/a
26	GATA3	chr9:98618627-98620148	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:98618433..98621075-chr9:98635041..98638347,3	K562	blood:
2	chr9:98619085..98621795-chr9:98636062..98638069,2	K562	blood:
3	chr9:98617573..98619992-chr9:98637959..98639556,2	MCF-7	breast:
4	chr9:98614433..98624477-chr9:98629889..98639636,23	MCF-7	breast:

Variant related genes	Relation type
RNU2-46P	TF binding region
ENSG00000175611	Chromatin interaction
ENSG00000182150	Chromatin interaction

Extended variants
information (count: 103 )
Associated
traits (count: 12 )

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10115110	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10117340	0.90[CEU][hapmap];0.91[MEX][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10125109	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10512245	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10739622	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10739705	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10760189	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10760261	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760262	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760679	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10818574	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10818746	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10818899	0.94[CEU][hapmap];0.83[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819650	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10819663	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10819668	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10819720	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10985156	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10985499	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10985769	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10987963	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10988755	0.95[CEU][hapmap];0.95[CHB][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10988817	0.95[CEU][hapmap];0.95[CHB][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10989035	0.83[AMR][1000 genomes]
rs1195130	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11998982	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12000073	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12340954	0.86[AMR][1000 genomes]
rs12343734	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345187	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.97[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12347675	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12348051	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1327996	0.90[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1327997	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13289466	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13294931	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13299166	0.86[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2026031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296858	0.87[AMR][1000 genomes]
rs2405134	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2405371	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2405372	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2943532	0.95[CEU][hapmap];0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs589362	0.95[CEU][hapmap];0.95[CHB][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs596413	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs603947	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs609296	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs617187	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs623438	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs624075	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs625105	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62559026	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62559767	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs640297	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6478977	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs649819	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs657451	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs666093	0.95[CEU][hapmap];0.95[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs667705	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs671058	0.95[CEU][hapmap];0.95[CHB][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs682682	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs684455	0.95[CEU][hapmap];0.95[CHB][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs686048	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs689619	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.97[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs689696	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs689697	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs689710	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs689738	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.97[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs689744	0.87[AMR][1000 genomes]
rs689761	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[GIH][hapmap];0.90[LWK][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs689804	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs689860	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs689911	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs689986	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs690056	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs690063	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs690286	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs690495	0.95[CEU][hapmap];0.95[CHB][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs690528	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs690633	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs694230	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs700962	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7847393	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7847983	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7852346	1.00[ASW][hapmap];0.95[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.90[LWK][hapmap];0.91[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7871709	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs816670	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs816672	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs816673	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs816674	0.94[CHB][hapmap];0.86[JPT][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs816675	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs816677	0.83[GIH][hapmap];0.81[TSI][hapmap]
rs816678	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs816680	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs816682	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs816683	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs816684	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs966217	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	nsv482884	chr9:98530027-98691937	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
4	nsv893600	chr9:98608989-98775459	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:12)

SNP	Gene	Cis/trans	Tissue	Source
rs12349742	ERCC6L2	cis	Artery Tibial	GTEx
rs12349742	C9orf130	cis	parietal	SCAN
rs12349742	IPPK	cis	cerebellum	SCAN
rs12349742	C9orf130	Cis_1M	lymphoblastoid	RTeQTL
rs12349742	LOC286353	cis	multi-tissue	Pritchard
rs12349742	C9orf102	cis	lymphoblastoid	seeQTL
rs12349742	C9orf130	cis	lymphoblastoid	seeQTL
rs12349742	SYK	cis	cerebellum	SCAN
rs12349742	LOC375748	cis	multi-tissue	Pritchard
rs12349742	C9orf102	cis	multi-tissue	Pritchard
rs12349742	ERCC6L2	cis	Adipose Subcutaneous	GTEx
rs12349742	C9orf130	cis	cerebellum	SCAN

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98602000-98632800	Weak transcription	Left Ventricle	heart
2	chr9:98602000-98636000	Weak transcription	Lung	lung
3	chr9:98602600-98620200	Weak transcription	Small Intestine	intestine
4	chr9:98604400-98621200	Weak transcription	Primary T cells from cord blood	blood
5	chr9:98607400-98621600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr9:98610200-98636200	Weak transcription	Brain Germinal Matrix	brain
7	chr9:98610200-98636800	Weak transcription	Gastric	stomach
8	chr9:98611200-98620200	Weak transcription	Primary B cells from cord blood	blood
9	chr9:98611200-98620400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr9:98613400-98632800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr9:98614200-98620400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:98614400-98620200	Enhancers	NHEK	skin
13	chr9:98614600-98620000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr9:98615200-98620400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr9:98615200-98624400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:98615400-98624000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:98615800-98620200	Weak transcription	K562	blood
18	chr9:98616000-98620600	Enhancers	Fetal Lung	lung
19	chr9:98616400-98620400	Enhancers	Fetal Stomach	stomach
20	chr9:98616600-98620200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:98616600-98620200	Enhancers	HSMM	muscle
22	chr9:98617000-98634200	Weak transcription	Fetal Kidney	kidney
23	chr9:98617200-98620200	Enhancers	HUVEC	blood vessel
24	chr9:98617800-98620400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr9:98618000-98620400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr9:98618000-98621800	Weak transcription	Aorta	Aorta
27	chr9:98618200-98620400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:98618400-98621200	Enhancers	Placenta Amnion	Placenta Amnion
29	chr9:98618600-98620200	Enhancers	HMEC	breast
30	chr9:98618600-98620200	Enhancers	NHLF	lung
31	chr9:98618600-98621000	Enhancers	Hela-S3	cervix
32	chr9:98618800-98620000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr9:98618800-98620400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr9:98618800-98620400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr9:98618800-98620800	Enhancers	Fetal Muscle Leg	muscle
36	chr9:98619000-98620200	Enhancers	Ovary	ovary
37	chr9:98619200-98620000	Enhancers	HepG2	liver
38	chr9:98619200-98620200	Enhancers	Fetal Heart	heart
39	chr9:98619200-98620200	Enhancers	HSMMtube	muscle
40	chr9:98619200-98620400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr9:98619200-98620400	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr9:98619200-98620800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr9:98619400-98620200	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr9:98619400-98620200	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr9:98619400-98620200	Enhancers	Placenta	Placenta
46	chr9:98619400-98620200	Enhancers	Right Atrium	heart
47	chr9:98619400-98620400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr9:98619400-98620400	Enhancers	Esophagus	oesophagus
49	chr9:98619400-98620400	Enhancers	Fetal Muscle Trunk	muscle
50	chr9:98619400-98620600	Enhancers	Primary neutrophils fromperipheralblood	blood

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