Variant report

Variant	rs12349860
Chromosome Location	chr9:93688266-93688267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93676720..93679314-chr9:93684985..93688336,3	MCF-7	breast:
2	chr9:93685464..93688726-chr9:93695370..93697391,4	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10124819	1.00[AMR][1000 genomes]
rs12336477	1.00[AMR][1000 genomes]
rs12345699	1.00[AMR][1000 genomes]
rs12346151	1.00[AMR][1000 genomes]
rs7035017	1.00[AMR][1000 genomes]
rs73492574	1.00[AMR][1000 genomes]
rs7865699	1.00[ASW][hapmap];0.91[MKK][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1053252	chr9:93610132-93699103	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93683000-93692000	Weak transcription	Right Ventricle	heart
2	chr9:93684000-93688400	Weak transcription	Aorta	Aorta
3	chr9:93685600-93689200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:93686000-93690200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:93686200-93689600	Enhancers	Placenta Amnion	Placenta Amnion
6	chr9:93686400-93688400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:93686800-93690200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:93687000-93690200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:93687200-93688400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:93687200-93689000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr9:93687200-93690000	Enhancers	NHLF	lung
12	chr9:93687400-93689800	Enhancers	Placenta	Placenta
13	chr9:93687400-93690000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:93687400-93690200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:93687600-93688600	Enhancers	Osteobl	bone
16	chr9:93687600-93689000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr9:93687600-93689800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:93687600-93690000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr9:93687600-93690000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:93687600-93690000	Enhancers	NHDF-Ad	bronchial
21	chr9:93687800-93688400	Enhancers	NH-A	brain
22	chr9:93687800-93690000	Enhancers	HMEC	breast
23	chr9:93688000-93688400	Enhancers	HUVEC	blood vessel
24	chr9:93688200-93689200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:93688200-93689200	Weak transcription	A549	lung
26	chr9:93688200-93689200	Weak transcription	NHEK	skin

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