Variant report

Variant	rs12350355
Chromosome Location	chr9:8669654-8669655
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10977195	1.00[EUR][1000 genomes]
rs12000186	1.00[EUR][1000 genomes]
rs12351908	0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2137348	0.83[ASN][1000 genomes]
rs28756234	1.00[EUR][1000 genomes]
rs57272088	0.83[ASN][1000 genomes]
rs57746054	0.83[ASN][1000 genomes]
rs58186507	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58422526	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59819097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72700349	0.83[ASN][1000 genomes]
rs73640927	1.00[EUR][1000 genomes]
rs73640933	1.00[EUR][1000 genomes]
rs73640939	0.83[ASN][1000 genomes]
rs73640943	0.83[ASN][1000 genomes]
rs73640944	0.83[ASN][1000 genomes]
rs9886766	0.81[MKK][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv892232	chr9:8645448-8698875	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892233	chr9:8645448-8702964	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv892234	chr9:8645448-8703733	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8660800-8672400	Weak transcription	Brain Germinal Matrix	brain
2	chr9:8661400-8677400	Weak transcription	Brain Angular Gyrus	brain
3	chr9:8666200-8670800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:8667000-8672400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr9:8668000-8672600	Enhancers	Fetal Brain Female	brain
6	chr9:8668400-8671200	Enhancers	Brain Hippocampus Middle	brain
7	chr9:8668800-8671000	Enhancers	Brain Cingulate Gyrus	brain
8	chr9:8668800-8672600	Enhancers	Fetal Brain Male	brain
9	chr9:8669200-8670600	Weak transcription	Brain Anterior Caudate	brain
10	chr9:8669400-8670200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr9:8669400-8670400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr9:8669600-8671200	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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