Variant report

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12001740	1.00[EUR][1000 genomes]
rs12004182	1.00[EUR][1000 genomes]
rs12350355	0.83[ASN][1000 genomes]
rs2137348	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57272088	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57746054	1.00[ASN][1000 genomes]
rs58302765	1.00[EUR][1000 genomes]
rs73429611	1.00[EUR][1000 genomes]
rs73640939	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73640943	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892235	chr9:8700396-8865925	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv6474	chr9:8706602-8751414	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8695200-8711600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:8699600-8717800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:8700800-8718000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr9:8704400-8731800	Weak transcription	Fetal Lung	lung
5	chr9:8705800-8707400	Enhancers	Fetal Kidney	kidney
6	chr9:8705800-8707800	Enhancers	Brain Hippocampus Middle	brain
7	chr9:8706000-8707400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:8706000-8707400	Enhancers	Brain Cingulate Gyrus	brain
9	chr9:8706000-8707600	Enhancers	Brain Anterior Caudate	brain
10	chr9:8706200-8707400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr9:8706400-8707800	Enhancers	Brain Substantia Nigra	brain
12	chr9:8706600-8707600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr9:8706800-8707600	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr9:8706800-8714400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr9:8706800-8718000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr9:8707000-8707800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:8707000-8708800	Weak transcription	Fetal Brain Male	brain
18	chr9:8707000-8710400	Weak transcription	Ovary	ovary
19	chr9:8707000-8711600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr9:8707000-8711600	Weak transcription	Brain Angular Gyrus	brain

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