Variant report

Variant	rs58302765
Chromosome Location	chr9:8723929-8723930
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10977264	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10977265	1.00[ASN][1000 genomes]
rs10977266	1.00[ASN][1000 genomes]
rs12001740	1.00[EUR][1000 genomes]
rs12002364	1.00[ASN][1000 genomes]
rs12004150	1.00[ASN][1000 genomes]
rs12004182	1.00[EUR][1000 genomes]
rs12005542	1.00[ASN][1000 genomes]
rs1434261	0.83[AFR][1000 genomes]
rs2137348	1.00[EUR][1000 genomes]
rs55840753	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56189765	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57272088	1.00[EUR][1000 genomes]
rs57677998	0.81[AFR][1000 genomes]
rs58997119	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61070023	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61188633	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66523670	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs67646591	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs67807514	1.00[ASN][1000 genomes]
rs7042240	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72700400	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73427580	1.00[ASN][1000 genomes]
rs73429608	1.00[ASN][1000 genomes]
rs73429611	1.00[EUR][1000 genomes]
rs73640939	1.00[EUR][1000 genomes]
rs73640943	1.00[EUR][1000 genomes]
rs73640944	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv892235	chr9:8700396-8865925	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv6474	chr9:8706602-8751414	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1025800	chr9:8712487-9030627	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv539980	chr9:8712487-9030627	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8704400-8731800	Weak transcription	Fetal Lung	lung
2	chr9:8710600-8733600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:8716200-8732600	Weak transcription	Fetal Brain Female	brain
4	chr9:8718000-8724600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:8718400-8733600	Weak transcription	Psoas Muscle	Psoas
6	chr9:8718800-8724400	Weak transcription	Ovary	ovary
7	chr9:8718800-8730800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:8718800-8732800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:8719000-8725600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr9:8719000-8730800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr9:8719000-8733200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:8719000-8733200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:8719400-8725600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr9:8719400-8727000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:8720200-8724400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr9:8720600-8731800	Weak transcription	Brain Anterior Caudate	brain
17	chr9:8720600-8732600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr9:8721000-8724400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:8721000-8728800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:8721000-8732200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr9:8722000-8744600	Weak transcription	Dnd41	blood
22	chr9:8723000-8724800	Enhancers	Brain Substantia Nigra	brain
23	chr9:8723400-8726800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr9:8723400-8730400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr9:8723400-8732800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr9:8723600-8724000	Weak transcription	Brain Hippocampus Middle	brain
27	chr9:8723600-8724400	Weak transcription	Fetal Kidney	kidney
28	chr9:8723600-8730800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:8723800-8724600	Enhancers	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links