Variant report

Variant	rs12350756
Chromosome Location	chr9:26056086-26056087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10967194	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12352102	0.93[ASN][1000 genomes]
rs16910146	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61361053	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73431714	0.84[EUR][1000 genomes]
rs73431716	0.84[EUR][1000 genomes]
rs73474758	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73642453	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015883	chr9:25633359-26315286	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv892842	chr9:25954098-26102954	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv466324	chr9:26005487-26112748	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv613923	chr9:26005487-26112748	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv1027629	chr9:26034116-26069178	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv892843	chr9:26035315-26078764	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26055600-26056800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr9:26055600-26057000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:26055600-26058200	Weak transcription	NHDF-Ad	bronchial
4	chr9:26055800-26058000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:26056000-26056200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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