Variant report

Variant	rs12351976
Chromosome Location	chr9:96447802-96447803
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96445904..96447979-chr9:96722570..96724839,2	MCF-7	breast:
2	chr9:96447351..96448048-chr9:96706007..96706581,3	MCF-7	breast:
3	chr9:96447198..96448012-chr9:96724180..96725782,4	MCF-7	breast:
4	chr9:96447514..96448042-chr9:96670972..96671488,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10115715	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes]
rs10117599	0.91[EUR][1000 genomes]
rs10121780	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes]
rs10821205	0.90[ASN][1000 genomes]
rs10992817	0.90[EUR][1000 genomes]
rs10992818	0.90[EUR][1000 genomes]
rs10992820	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992843	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992873	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1132003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12335855	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12341126	0.90[EUR][1000 genomes]
rs12341865	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12348927	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12349481	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12350966	1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12352026	0.92[CEU][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13440078	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13440115	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2001316	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes]
rs2001995	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes]
rs35137913	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3750364	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41276198	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41276204	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4390004	0.90[ASN][1000 genomes]
rs55682342	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7023609	1.00[ASN][1000 genomes]
rs72747414	0.90[EUR][1000 genomes]
rs72747430	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72747446	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72747448	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72747451	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72747468	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72747474	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72747481	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7863264	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7869847	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes]
rs8690	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs9695734	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96442800-96449200	Weak transcription	Fetal Muscle Leg	muscle
2	chr9:96444200-96449400	Enhancers	Fetal Stomach	stomach
3	chr9:96446600-96448600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:96446800-96448200	Enhancers	HUVEC	blood vessel
5	chr9:96447200-96448600	Enhancers	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links