Variant report

Variant	rs7863264
Chromosome Location	chr9:96472946-96472947
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10115715	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10121780	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10821205	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992843	0.83[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs10992873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1132003	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs12335855	0.85[ASN][1000 genomes]
rs12341865	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs12348927	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs12349481	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12350966	0.82[ASN][1000 genomes]
rs12351976	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12352026	0.84[ASN][1000 genomes]
rs2001316	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2001995	0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs3750364	1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs41276198	0.81[ASN][1000 genomes]
rs41276204	0.85[ASN][1000 genomes]
rs4390004	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55682342	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7023609	0.90[ASN][1000 genomes]
rs72747430	0.81[ASN][1000 genomes]
rs72747446	1.00[AFR][1000 genomes]
rs72747448	0.81[ASN][1000 genomes]
rs72747451	0.81[ASN][1000 genomes]
rs72747468	0.87[ASN][1000 genomes]
rs72747474	0.87[ASN][1000 genomes]
rs72747481	0.90[ASN][1000 genomes]
rs72747487	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7869847	0.83[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs8690	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs9650754	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9695734	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	esv3481687	chr9:96468431-96473429	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3517967	chr9:96469681-96472979	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv614884	chr9:96470371-96475579	Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1817573	chr9:96470371-96483140	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1820643	chr9:96470371-96483140	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1832095	chr9:96470371-96483140	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv614888	chr9:96470473-96483140	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1805275	chr9:96470473-96501599	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv614893	chr9:96470635-96483474	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv1832783	chr9:96470686-96501599	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv1813422	chr9:96470738-96483140	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv1798985	chr9:96470848-96501850	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv1799910	chr9:96470848-96501905	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv614900	chr9:96470954-96483140	Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv614901	chr9:96470954-96483474	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv614902	chr9:96471011-96483474	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96470600-96473000	Enhancers	Stomach Smooth Muscle	stomach
2	chr9:96472800-96473600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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