Variant report
| Variant | rs12354830 |
|---|---|
| Chromosome Location | chr10:27940239-27940240 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs1542792 | 1.00[ASN][1000 genomes] |
| rs1628869 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1687726 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2007516 | 0.98[ASN][1000 genomes] |
| rs2172084 | 1.00[ASN][1000 genomes] |
| rs2637281 | 0.96[ASN][1000 genomes] |
| rs2637286 | 0.99[ASN][1000 genomes] |
| rs2637299 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2637310 | 1.00[ASN][1000 genomes] |
| rs2637329 | 1.00[ASN][1000 genomes] |
| rs2637330 | 1.00[ASN][1000 genomes] |
| rs2642276 | 1.00[ASN][1000 genomes] |
| rs2642278 | 1.00[ASN][1000 genomes] |
| rs2642282 | 1.00[ASN][1000 genomes] |
| rs2642296 | 0.96[ASN][1000 genomes] |
| rs2642305 | 0.99[ASN][1000 genomes] |
| rs2642306 | 0.99[ASN][1000 genomes] |
| rs2642309 | 1.00[ASN][1000 genomes] |
| rs2808261 | 1.00[ASN][1000 genomes] |
| rs2808266 | 1.00[ASN][1000 genomes] |
| rs2808274 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2808275 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2808276 | 0.99[ASN][1000 genomes] |
| rs2808291 | 0.99[ASN][1000 genomes] |
| rs2815505 | 1.00[ASN][1000 genomes] |
| rs2815508 | 1.00[ASN][1000 genomes] |
| rs2815511 | 1.00[ASN][1000 genomes] |
| rs2815512 | 1.00[ASN][1000 genomes] |
| rs2815519 | 1.00[ASN][1000 genomes] |
| rs2815528 | 1.00[ASN][1000 genomes] |
| rs2815534 | 1.00[ASN][1000 genomes] |
| rs2815542 | 0.96[ASN][1000 genomes] |
| rs2815543 | 0.96[ASN][1000 genomes] |
| rs2932914 | 1.00[ASN][1000 genomes] |
| rs903282 | 0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv550241 | chr10:27569521-28025771 | Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
| 2 | esv3368825 | chr10:27864181-28043820 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv894985 | chr10:27869503-27957785 | Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv894986 | chr10:27904646-27957785 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:27933800-27963600 | Weak transcription | Ovary | ovary |
| 2 | chr10:27939200-27942200 | Weak transcription | Pancreas | Pancrea |
