Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12354830	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542792	1.00[ASN][1000 genomes]
rs1687726	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2007516	0.98[ASN][1000 genomes]
rs2172084	1.00[ASN][1000 genomes]
rs2637281	0.96[ASN][1000 genomes]
rs2637286	0.99[ASN][1000 genomes]
rs2637299	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2637310	1.00[ASN][1000 genomes]
rs2637329	1.00[ASN][1000 genomes]
rs2637330	1.00[ASN][1000 genomes]
rs2642276	1.00[ASN][1000 genomes]
rs2642278	1.00[ASN][1000 genomes]
rs2642282	1.00[ASN][1000 genomes]
rs2642296	0.96[ASN][1000 genomes]
rs2642305	0.99[ASN][1000 genomes]
rs2642306	0.99[ASN][1000 genomes]
rs2642309	1.00[ASN][1000 genomes]
rs2808261	1.00[ASN][1000 genomes]
rs2808266	1.00[ASN][1000 genomes]
rs2808274	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2808275	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2808276	0.99[ASN][1000 genomes]
rs2808291	0.99[ASN][1000 genomes]
rs2815505	1.00[ASN][1000 genomes]
rs2815508	1.00[ASN][1000 genomes]
rs2815511	1.00[ASN][1000 genomes]
rs2815512	1.00[ASN][1000 genomes]
rs2815519	1.00[ASN][1000 genomes]
rs2815528	1.00[ASN][1000 genomes]
rs2815534	1.00[ASN][1000 genomes]
rs2815542	0.96[ASN][1000 genomes]
rs2815543	0.96[ASN][1000 genomes]
rs2932914	1.00[ASN][1000 genomes]
rs903282	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv894985	chr10:27869503-27957785	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv894986	chr10:27904646-27957785	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3362263	chr10:27929908-27934180	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27927200-27932200	Weak transcription	Osteobl	bone
2	chr10:27927400-27932000	Weak transcription	HSMMtube	muscle
3	chr10:27927800-27932200	Weak transcription	Adipose Nuclei	Adipose

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