Variant report

Variant	rs12355077
Chromosome Location	chr10:18477279-18477280
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12355980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16916932	1.00[CEU][hapmap]
rs16916984	0.85[CEU][hapmap]
rs7897853	0.85[CEU][hapmap]
rs7914927	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039174	chr10:18474463-18493676	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18468400-18486000	Weak transcription	Fetal Intestine Large	intestine
2	chr10:18469000-18486000	Weak transcription	Aorta	Aorta
3	chr10:18469200-18486000	Weak transcription	Fetal Intestine Small	intestine
4	chr10:18469400-18479000	Weak transcription	Right Ventricle	heart
5	chr10:18469400-18491200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:18469600-18483200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:18469600-18486000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:18469800-18479200	Weak transcription	Left Ventricle	heart
9	chr10:18470200-18484000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:18470200-18484400	Weak transcription	Right Atrium	heart
11	chr10:18471200-18483000	Weak transcription	Fetal Stomach	stomach
12	chr10:18471400-18483600	Weak transcription	Fetal Lung	lung
13	chr10:18471600-18481000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:18473600-18477400	Enhancers	Ovary	ovary
15	chr10:18474800-18478600	Weak transcription	Fetal Heart	heart
16	chr10:18475000-18481000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:18475200-18479000	Weak transcription	Pancreas	Pancrea
18	chr10:18475200-18491600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr10:18475400-18479800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr10:18476800-18477400	Enhancers	Spleen	Spleen
21	chr10:18477200-18477400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links