Variant report
| Variant | rs12355532 |
|---|---|
| Chromosome Location | chr10:37885903-37885904 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11011284 | 0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11011287 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11011326 | 0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11011328 | 0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11011330 | 0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11011331 | 0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11011334 | 0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11011354 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11011355 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs11011366 | 0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs12357391 | 0.82[ASN][1000 genomes] |
| rs12357418 | 0.82[ASN][1000 genomes] |
| rs12359608 | 0.90[CHB][hapmap];1.00[JPT][hapmap] |
| rs2076809 | 0.82[ASN][1000 genomes] |
| rs34496143 | 0.82[ASN][1000 genomes] |
| rs35215319 | 0.83[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs35872666 | 0.83[ASN][1000 genomes] |
| rs35954589 | 0.83[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs61857897 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs61857913 | 0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs61858625 | 0.82[ASN][1000 genomes] |
| rs61858626 | 0.82[ASN][1000 genomes] |
| rs72639533 | 0.82[ASN][1000 genomes] |
| rs72789804 | 0.81[AMR][1000 genomes] |
| rs72789805 | 0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895030 | chr10:37715737-38674609 | Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 53 gene(s) | inside rSNPs | diseases |
| 2 | nsv1045684 | chr10:37765361-38426204 | Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 44 gene(s) | inside rSNPs | diseases |
| 3 | nsv540564 | chr10:37765361-38426204 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 44 gene(s) | inside rSNPs | diseases |
| 4 | nsv1041584 | chr10:37834376-37894260 | Enhancers ZNF genes & repeats Weak transcription | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv975797 | chr10:37883121-37904647 | ZNF genes & repeats Enhancers | TF binding region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:37884000-37887000 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
