Variant report

Variant	rs11011284
Chromosome Location	chr10:37905848-37905849
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10827823	0.82[ASN][1000 genomes]
rs10827824	0.82[ASN][1000 genomes]
rs10827825	0.82[ASN][1000 genomes]
rs10827828	0.80[ASN][1000 genomes]
rs11011287	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011326	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11011328	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11011330	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11011331	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11011334	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11011354	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11011355	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs11011363	0.80[ASN][1000 genomes]
rs11011366	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs11011370	0.80[ASN][1000 genomes]
rs11011372	0.80[ASN][1000 genomes]
rs11492508	0.80[ASN][1000 genomes]
rs11511139	0.82[ASN][1000 genomes]
rs11511141	0.82[ASN][1000 genomes]
rs11516808	0.81[ASN][1000 genomes]
rs11523837	0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11595684	0.80[ASN][1000 genomes]
rs1208683	0.89[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs1208695	0.80[ASN][1000 genomes]
rs1208716	0.80[ASN][1000 genomes]
rs1208770	0.82[ASN][1000 genomes]
rs1208779	0.80[ASN][1000 genomes]
rs1212108	0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12355532	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12357391	0.85[ASN][1000 genomes]
rs12357418	0.85[ASN][1000 genomes]
rs12358094	0.82[ASN][1000 genomes]
rs12358108	0.82[ASN][1000 genomes]
rs12359608	0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12360411	0.82[ASN][1000 genomes]
rs12570939	0.82[ASN][1000 genomes]
rs12571820	0.82[ASN][1000 genomes]
rs12763390	0.80[ASN][1000 genomes]
rs12763409	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs12768391	0.80[ASN][1000 genomes]
rs12781703	0.82[ASN][1000 genomes]
rs12782327	0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12783666	0.82[ASN][1000 genomes]
rs12783722	0.82[ASN][1000 genomes]
rs1742235	0.82[ASN][1000 genomes]
rs1779015	0.82[ASN][1000 genomes]
rs1779150	0.82[ASN][1000 genomes]
rs2076809	0.85[ASN][1000 genomes]
rs2753877	0.82[ASN][1000 genomes]
rs2891586	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs34496143	0.85[ASN][1000 genomes]
rs35215319	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35872666	0.87[ASN][1000 genomes]
rs35951606	0.80[ASN][1000 genomes]
rs35954589	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3824584	0.80[ASN][1000 genomes]
rs61857897	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61857913	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61858625	0.85[ASN][1000 genomes]
rs61858626	0.85[ASN][1000 genomes]
rs61859667	0.82[ASN][1000 genomes]
rs72639533	0.85[ASN][1000 genomes]
rs72789804	0.81[AMR][1000 genomes]
rs72789805	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv971847	chr10:37892555-37920952	Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv971846	chr10:37892555-37937603	ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11011284	ZNF37A	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37905200-37906000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell

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