Variant report

Variant	rs1742235
Chromosome Location	chr10:38052256-38052257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs10740949	0.86[EUR][1000 genomes]
rs10764144	0.83[EUR][1000 genomes]
rs10827818	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10827823	1.00[ASN][1000 genomes]
rs10827824	1.00[ASN][1000 genomes]
rs10827825	1.00[ASN][1000 genomes]
rs10827828	0.98[ASN][1000 genomes]
rs10827829	0.95[ASN][1000 genomes]
rs10827831	0.95[ASN][1000 genomes]
rs11011284	0.82[ASN][1000 genomes]
rs11011287	0.82[ASN][1000 genomes]
rs11011326	0.90[ASN][1000 genomes]
rs11011328	0.90[ASN][1000 genomes]
rs11011330	0.90[ASN][1000 genomes]
rs11011331	0.90[ASN][1000 genomes]
rs11011334	0.93[ASN][1000 genomes]
rs11011341	0.86[EUR][1000 genomes]
rs11011346	0.91[EUR][1000 genomes]
rs11011354	1.00[ASN][1000 genomes]
rs11011355	1.00[ASN][1000 genomes]
rs11011363	0.98[ASN][1000 genomes]
rs11011366	0.98[ASN][1000 genomes]
rs11011370	0.98[ASN][1000 genomes]
rs11011372	0.98[ASN][1000 genomes]
rs11011378	0.83[ASN][1000 genomes]
rs11011384	0.82[ASN][1000 genomes]
rs1148287	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11492508	0.98[ASN][1000 genomes]
rs11511139	1.00[ASN][1000 genomes]
rs11511141	1.00[ASN][1000 genomes]
rs11516808	0.98[ASN][1000 genomes]
rs11523837	0.98[ASN][1000 genomes]
rs11595684	0.98[ASN][1000 genomes]
rs11597286	0.95[ASN][1000 genomes]
rs11599689	0.97[ASN][1000 genomes]
rs1208555	0.85[EUR][1000 genomes]
rs1208556	0.85[EUR][1000 genomes]
rs1208560	0.85[EUR][1000 genomes]
rs1208573	0.85[EUR][1000 genomes]
rs1208587	0.85[EUR][1000 genomes]
rs1208591	0.85[EUR][1000 genomes]
rs1208601	0.82[EUR][1000 genomes]
rs1208633	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1208645	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1208658	0.85[EUR][1000 genomes]
rs1208683	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1208695	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1208716	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1208770	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1208779	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1209425	0.87[ASN][1000 genomes]
rs1212108	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1212617	0.86[EUR][1000 genomes]
rs12267169	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12357391	0.97[ASN][1000 genomes]
rs12357418	0.97[ASN][1000 genomes]
rs12358094	1.00[ASN][1000 genomes]
rs12358108	1.00[ASN][1000 genomes]
rs12359608	0.98[ASN][1000 genomes]
rs12360411	1.00[ASN][1000 genomes]
rs12570939	1.00[ASN][1000 genomes]
rs12571820	1.00[ASN][1000 genomes]
rs12763390	0.98[ASN][1000 genomes]
rs12763409	0.98[ASN][1000 genomes]
rs12768391	0.98[ASN][1000 genomes]
rs12776092	0.92[EUR][1000 genomes]
rs12781703	1.00[ASN][1000 genomes]
rs12782327	0.98[ASN][1000 genomes]
rs12783272	0.85[EUR][1000 genomes]
rs12783666	1.00[ASN][1000 genomes]
rs12783722	1.00[ASN][1000 genomes]
rs1322319	0.82[ASN][1000 genomes]
rs1619266	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1735621	0.88[EUR][1000 genomes]
rs1735629	0.88[EUR][1000 genomes]
rs1735641	0.88[EUR][1000 genomes]
rs1779015	1.00[ASN][1000 genomes]
rs1779068	0.85[EUR][1000 genomes]
rs1779075	0.88[EUR][1000 genomes]
rs1779150	1.00[ASN][1000 genomes]
rs1830612	0.86[EUR][1000 genomes]
rs2076809	0.97[ASN][1000 genomes]
rs2144848	0.85[EUR][1000 genomes]
rs2295872	0.82[ASN][1000 genomes]
rs2472149	0.85[EUR][1000 genomes]
rs2738185	0.85[EUR][1000 genomes]
rs2753877	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2753880	0.88[EUR][1000 genomes]
rs2891586	0.95[ASN][1000 genomes]
rs34185758	0.82[EUR][1000 genomes]
rs34496143	0.97[ASN][1000 genomes]
rs35215319	0.82[ASN][1000 genomes]
rs35872666	0.95[ASN][1000 genomes]
rs35951606	0.98[ASN][1000 genomes]
rs35954589	0.82[ASN][1000 genomes]
rs3824584	0.98[ASN][1000 genomes]
rs3824585	0.95[ASN][1000 genomes]
rs4934898	0.86[EUR][1000 genomes]
rs61857913	0.82[ASN][1000 genomes]
rs61858625	0.97[ASN][1000 genomes]
rs61858626	0.97[ASN][1000 genomes]
rs61859667	1.00[ASN][1000 genomes]
rs61859679	0.97[ASN][1000 genomes]
rs72639533	0.97[ASN][1000 genomes]
rs7476802	0.91[EUR][1000 genomes]
rs9417261	0.95[ASN][1000 genomes]
rs9417262	0.84[ASN][1000 genomes]
rs9417263	0.95[ASN][1000 genomes]
rs9417264	0.92[ASN][1000 genomes]
rs9417265	0.95[ASN][1000 genomes]
rs9417267	0.91[ASN][1000 genomes]
rs9417268	0.95[ASN][1000 genomes]
rs9418288	0.95[ASN][1000 genomes]
rs9418289	0.95[ASN][1000 genomes]
rs9418291	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9418294	0.95[ASN][1000 genomes]
rs9418297	0.82[ASN][1000 genomes]
rs9418298	0.82[ASN][1000 genomes]
rs9418299	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv975812	chr10:37990724-38084639	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38043600-38060800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr10:38047000-38069400	Weak transcription	Ovary	ovary
3	chr10:38049000-38056400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:38049000-38064800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:38050000-38054400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:38051600-38052400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:38051600-38052400	ZNF genes & repeats	Liver	Liver
8	chr10:38051800-38066000	Weak transcription	HepG2	liver

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