Variant report

Variant	rs2753880
Chromosome Location	chr10:38173338-38173339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs1007133	1.00[ASN][1000 genomes]
rs10764149	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10827844	0.86[ASN][1000 genomes]
rs11011346	0.80[EUR][1000 genomes]
rs11011384	0.90[ASN][1000 genomes]
rs11011401	1.00[ASN][1000 genomes]
rs11011405	1.00[ASN][1000 genomes]
rs11011426	0.93[ASN][1000 genomes]
rs11011431	0.93[ASN][1000 genomes]
rs1148287	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11594000	0.93[ASN][1000 genomes]
rs11598044	0.86[ASN][1000 genomes]
rs1208555	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1208556	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1208560	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1208573	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1208587	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1208591	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1208601	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1208633	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1208645	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1208658	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1208683	0.86[EUR][1000 genomes]
rs1208695	0.89[EUR][1000 genomes]
rs1208716	0.88[EUR][1000 genomes]
rs1208770	0.88[EUR][1000 genomes]
rs1208779	0.90[EUR][1000 genomes]
rs1212108	0.91[EUR][1000 genomes]
rs1212617	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12267169	0.86[EUR][1000 genomes]
rs12357256	0.81[ASN][1000 genomes]
rs12571785	1.00[ASN][1000 genomes]
rs12768276	0.93[ASN][1000 genomes]
rs12776092	0.81[EUR][1000 genomes]
rs1322319	0.90[ASN][1000 genomes]
rs1735621	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1735629	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1735641	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1742235	0.88[EUR][1000 genomes]
rs1779068	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1779075	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2092993	1.00[ASN][1000 genomes]
rs2092995	0.93[ASN][1000 genomes]
rs2103936	0.93[ASN][1000 genomes]
rs2142346	0.88[ASN][1000 genomes]
rs2144845	0.98[ASN][1000 genomes]
rs2144848	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2245081	0.93[ASN][1000 genomes]
rs2295872	0.90[ASN][1000 genomes]
rs2472149	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2474548	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2474549	0.93[ASN][1000 genomes]
rs2505220	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2505233	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2505255	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2738185	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2738186	0.93[ASN][1000 genomes]
rs2738187	0.93[ASN][1000 genomes]
rs2738190	0.93[ASN][1000 genomes]
rs2738191	0.90[ASN][1000 genomes]
rs2738193	0.93[ASN][1000 genomes]
rs2738207	0.93[ASN][1000 genomes]
rs2738208	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2738209	0.93[ASN][1000 genomes]
rs2738210	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2738219	0.93[ASN][1000 genomes]
rs2738222	1.00[ASN][1000 genomes]
rs2749559	1.00[ASN][1000 genomes]
rs2749563	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2749569	0.83[ASN][1000 genomes]
rs2749575	0.93[ASN][1000 genomes]
rs2749577	0.93[ASN][1000 genomes]
rs2749586	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2749587	0.93[ASN][1000 genomes]
rs2749588	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2749589	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2749593	0.93[ASN][1000 genomes]
rs2753877	0.87[EUR][1000 genomes]
rs2753878	1.00[ASN][1000 genomes]
rs2753879	1.00[ASN][1000 genomes]
rs2753882	1.00[ASN][1000 genomes]
rs2799495	1.00[ASN][1000 genomes]
rs2799496	0.97[ASN][1000 genomes]
rs2799499	0.97[ASN][1000 genomes]
rs2799501	0.97[ASN][1000 genomes]
rs2799505	1.00[ASN][1000 genomes]
rs2799506	1.00[ASN][1000 genomes]
rs2799507	1.00[ASN][1000 genomes]
rs2799509	1.00[ASN][1000 genomes]
rs594594	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs596118	0.93[ASN][1000 genomes]
rs598857	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs615718	0.93[ASN][1000 genomes]
rs61857002	1.00[ASN][1000 genomes]
rs61858886	0.81[ASN][1000 genomes]
rs624359	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs628330	0.93[ASN][1000 genomes]
rs633029	0.93[ASN][1000 genomes]
rs633400	0.90[ASN][1000 genomes]
rs637255	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs647617	0.90[ASN][1000 genomes]
rs650873	0.93[ASN][1000 genomes]
rs656126	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs658161	0.87[EUR][1000 genomes]
rs662928	0.88[EUR][1000 genomes]
rs675628	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs688608	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7476802	0.80[EUR][1000 genomes]
rs9417283	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9418291	0.81[EUR][1000 genomes]
rs9418297	0.90[ASN][1000 genomes]
rs9418298	0.90[ASN][1000 genomes]
rs9418299	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38155600-38176200	Weak transcription	Stomach Smooth Muscle	stomach

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