Variant report

Variant	rs2505255
Chromosome Location	chr10:38359642-38359643
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs1007133	0.81[ASN][1000 genomes]
rs10764149	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10827844	0.95[ASN][1000 genomes]
rs11011401	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11011405	0.81[ASN][1000 genomes]
rs11011426	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11011431	0.88[ASN][1000 genomes]
rs11594000	0.88[ASN][1000 genomes]
rs11598044	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1208555	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1208556	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1208560	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1208573	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1208587	0.89[CEU][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1208591	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1208601	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1208633	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1208658	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1212617	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12357256	1.00[ASN][1000 genomes]
rs12571785	0.81[ASN][1000 genomes]
rs12768276	0.88[ASN][1000 genomes]
rs1735621	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1735629	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1735641	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1779068	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1779075	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2092993	0.81[ASN][1000 genomes]
rs2092995	0.88[ASN][1000 genomes]
rs2103936	0.88[ASN][1000 genomes]
rs2142346	0.83[ASN][1000 genomes]
rs2144845	0.80[ASN][1000 genomes]
rs2144848	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2245081	0.88[ASN][1000 genomes]
rs2472149	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2474548	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2474549	0.88[ASN][1000 genomes]
rs2474606	1.00[CHB][hapmap]
rs2505220	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2505233	0.95[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2738185	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2738186	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2738187	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2738190	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2738191	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2738193	1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs2738207	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2738208	0.95[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2738209	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2738210	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2738222	0.81[ASN][1000 genomes]
rs2749559	0.81[ASN][1000 genomes]
rs2749563	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2749575	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2749577	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2749586	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2749587	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2749588	0.89[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2749589	0.89[CEU][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2749593	0.88[ASN][1000 genomes]
rs2753878	0.81[ASN][1000 genomes]
rs2753879	0.81[ASN][1000 genomes]
rs2753880	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2753882	0.81[ASN][1000 genomes]
rs2799495	0.81[ASN][1000 genomes]
rs2799496	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2799499	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2799505	0.81[ASN][1000 genomes]
rs2799506	0.81[ASN][1000 genomes]
rs2799507	0.81[ASN][1000 genomes]
rs2799509	0.81[ASN][1000 genomes]
rs594594	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs596118	0.88[ASN][1000 genomes]
rs598857	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs615718	0.88[ASN][1000 genomes]
rs61857002	0.81[ASN][1000 genomes]
rs61858886	1.00[ASN][1000 genomes]
rs624359	0.95[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs628330	0.88[ASN][1000 genomes]
rs633029	0.88[ASN][1000 genomes]
rs633400	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs637255	0.95[CEU][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs647617	0.85[ASN][1000 genomes]
rs650873	0.88[ASN][1000 genomes]
rs656126	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs658161	0.88[EUR][1000 genomes]
rs662928	0.90[CEU][hapmap];0.81[CHB][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs675628	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs688608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72639538	0.89[ASN][1000 genomes]
rs9417283	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv540566	chr10:38301001-38680127	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv550419	chr10:38311777-38501654	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv947854	chr10:38357357-38359814	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38350600-38364000	Weak transcription	Ovary	ovary
2	chr10:38353200-38361400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr10:38359600-38359800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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