Variant report

Variant	rs637255
Chromosome Location	chr10:38298452-38298453
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:38262821..38267029-chr10:38297888..38300843,9	MCF-7	breast:
2	chr10:38298279..38301657-chr10:38381478..38384966,6	MCF-7	breast:
3	chr10:38259864..38262240-chr10:38297171..38299519,2	K562	blood:

Variant related genes	Relation type
ENSG00000226447	Chromatin interaction
ENSG00000075407	Chromatin interaction
ENSG00000175395	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10764149	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10827831	0.90[JPT][hapmap]
rs11011401	0.81[JPT][hapmap]
rs11011426	0.90[JPT][hapmap]
rs1148287	0.90[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs11523837	0.81[JPT][hapmap]
rs11597286	0.90[JPT][hapmap]
rs11598044	1.00[JPT][hapmap]
rs1208555	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1208556	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1208560	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1208573	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1208587	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1208591	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1208601	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1208633	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1208645	0.90[CEU][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs1208658	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1212108	0.81[EUR][1000 genomes]
rs1212617	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1735621	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1735629	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1735641	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1779068	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1779075	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2144848	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2472149	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2474548	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505220	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2505233	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2505255	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2738185	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2738186	0.90[JPT][hapmap]
rs2738187	0.90[JPT][hapmap]
rs2738190	0.90[JPT][hapmap]
rs2738191	0.90[JPT][hapmap]
rs2738207	0.81[JPT][hapmap]
rs2738208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2738209	0.90[JPT][hapmap]
rs2738210	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2738219	0.81[JPT][hapmap]
rs2749563	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2749575	0.90[JPT][hapmap]
rs2749577	0.81[JPT][hapmap]
rs2749586	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2749587	0.90[JPT][hapmap]
rs2749588	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2749589	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2753880	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2799496	0.90[JPT][hapmap]
rs2799499	0.90[JPT][hapmap]
rs2891586	0.89[JPT][hapmap]
rs3824585	0.90[JPT][hapmap]
rs594594	0.94[CEU][hapmap];0.88[CHB][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs598857	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs624359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs633400	0.90[JPT][hapmap]
rs656126	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs658161	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs662928	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs675628	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs688608	0.95[CEU][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9417267	0.90[JPT][hapmap]
rs9417268	0.90[JPT][hapmap]
rs9417283	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv534122	chr10:38240258-38356008	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38296200-38298600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:38296800-38298800	Weak transcription	HMEC	breast
3	chr10:38296800-38299200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:38297200-38299000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:38297200-38299000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:38297400-38298600	Weak transcription	HepG2	liver
7	chr10:38297400-38298800	Weak transcription	NHEK	skin
8	chr10:38297400-38299000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:38298000-38298600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr10:38298000-38299600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr10:38298200-38298600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:38298200-38298600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr10:38298200-38298600	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr10:38298200-38298600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:38298200-38298600	Enhancers	Dnd41	blood
16	chr10:38298200-38298800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:38298400-38298600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:38298400-38298600	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr10:38298400-38298800	Enhancers	Primary hematopoietic stem cells	blood
20	chr10:38298400-38298800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:38298400-38298800	Enhancers	Fetal Muscle Leg	muscle
22	chr10:38298400-38298800	Enhancers	GM12878-XiMat	blood
23	chr10:38298400-38298800	Flanking Active TSS	K562	blood
24	chr10:38298400-38299000	Enhancers	Primary B cells from peripheral blood	blood
25	chr10:38298400-38299000	Enhancers	Adipose Nuclei	Adipose
26	chr10:38298400-38299000	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr10:38298400-38299400	Flanking Active TSS	Primary B cells from cord blood	blood
28	chr10:38298400-38301000	Active TSS	Rectal Smooth Muscle	rectum

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