Variant report

Variant	rs1208633
Chromosome Location	chr10:38156873-38156874
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:38156525..38159313-chr10:38163348..38165631,2	MCF-7	breast:
2	chr10:38145415..38147185-chr10:38156483..38158334,3	MCF-7	breast:
3	chr10:38151841..38153631-chr10:38154577..38157511,2	K562	blood:
4	chr10:38144996..38148878-chr10:38155700..38160794,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236514	Chromatin interaction
ENSG00000198105	Chromatin interaction

Extended variants
information (count: 161 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:155)

rs_ID	r²[population]
rs1007133	0.90[ASN][1000 genomes]
rs10764149	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10827823	0.82[ASN][1000 genomes]
rs10827824	0.82[ASN][1000 genomes]
rs10827825	0.82[ASN][1000 genomes]
rs10827828	0.83[ASN][1000 genomes]
rs10827829	0.86[ASN][1000 genomes]
rs10827831	0.86[ASN][1000 genomes]
rs11011346	0.80[EUR][1000 genomes]
rs11011354	0.82[ASN][1000 genomes]
rs11011355	0.82[ASN][1000 genomes]
rs11011363	0.83[ASN][1000 genomes]
rs11011366	0.83[ASN][1000 genomes]
rs11011370	0.83[ASN][1000 genomes]
rs11011372	0.83[ASN][1000 genomes]
rs11011384	1.00[ASN][1000 genomes]
rs11011401	0.90[ASN][1000 genomes]
rs11011405	0.90[ASN][1000 genomes]
rs11011426	0.83[ASN][1000 genomes]
rs11011431	0.83[ASN][1000 genomes]
rs1148287	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11492508	0.83[ASN][1000 genomes]
rs11511139	0.82[ASN][1000 genomes]
rs11511141	0.82[ASN][1000 genomes]
rs11516808	0.80[ASN][1000 genomes]
rs11523837	0.83[ASN][1000 genomes]
rs11594000	0.83[ASN][1000 genomes]
rs11595684	0.83[ASN][1000 genomes]
rs11597286	0.86[ASN][1000 genomes]
rs1208555	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1208556	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1208560	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1208573	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1208587	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1208591	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1208601	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1208645	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1208658	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1208683	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1208695	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1208716	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1208770	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1208779	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1212108	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1212617	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12267169	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12358094	0.82[ASN][1000 genomes]
rs12358108	0.82[ASN][1000 genomes]
rs12359608	0.83[ASN][1000 genomes]
rs12360411	0.82[ASN][1000 genomes]
rs12570939	0.82[ASN][1000 genomes]
rs12571785	0.90[ASN][1000 genomes]
rs12571820	0.82[ASN][1000 genomes]
rs12763390	0.83[ASN][1000 genomes]
rs12763409	0.83[ASN][1000 genomes]
rs12768276	0.83[ASN][1000 genomes]
rs12768391	0.83[ASN][1000 genomes]
rs12776092	0.81[EUR][1000 genomes]
rs12781703	0.82[ASN][1000 genomes]
rs12782327	0.83[ASN][1000 genomes]
rs12783666	0.82[ASN][1000 genomes]
rs12783722	0.82[ASN][1000 genomes]
rs1322319	1.00[ASN][1000 genomes]
rs1735621	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1735629	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1735641	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1742235	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1779015	0.82[ASN][1000 genomes]
rs1779068	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1779075	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1779150	0.82[ASN][1000 genomes]
rs2092993	0.90[ASN][1000 genomes]
rs2092995	0.83[ASN][1000 genomes]
rs2103936	0.83[ASN][1000 genomes]
rs2144845	0.88[ASN][1000 genomes]
rs2144848	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2245081	0.83[ASN][1000 genomes]
rs2295872	1.00[ASN][1000 genomes]
rs2472149	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2474548	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2474549	0.83[ASN][1000 genomes]
rs2505220	0.81[AMR][1000 genomes]
rs2505233	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2505255	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2738185	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2738186	0.83[ASN][1000 genomes]
rs2738187	0.83[ASN][1000 genomes]
rs2738190	0.83[ASN][1000 genomes]
rs2738191	0.80[ASN][1000 genomes]
rs2738193	0.83[ASN][1000 genomes]
rs2738207	0.83[ASN][1000 genomes]
rs2738208	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2738209	0.83[ASN][1000 genomes]
rs2738210	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2738219	0.97[ASN][1000 genomes]
rs2738222	0.90[ASN][1000 genomes]
rs2749559	0.90[ASN][1000 genomes]
rs2749563	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2749575	0.83[ASN][1000 genomes]
rs2749577	0.83[ASN][1000 genomes]
rs2749586	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2749587	0.83[ASN][1000 genomes]
rs2749588	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2749589	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2749593	0.83[ASN][1000 genomes]
rs2753877	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2753878	0.90[ASN][1000 genomes]
rs2753879	0.90[ASN][1000 genomes]
rs2753880	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2753882	0.90[ASN][1000 genomes]
rs2799495	0.90[ASN][1000 genomes]
rs2799496	0.86[ASN][1000 genomes]
rs2799499	0.86[ASN][1000 genomes]
rs2799501	0.93[ASN][1000 genomes]
rs2799505	0.90[ASN][1000 genomes]
rs2799506	0.90[ASN][1000 genomes]
rs2799507	0.90[ASN][1000 genomes]
rs2799509	0.90[ASN][1000 genomes]
rs2891586	0.86[ASN][1000 genomes]
rs35951606	0.83[ASN][1000 genomes]
rs3824584	0.83[ASN][1000 genomes]
rs3824585	0.86[ASN][1000 genomes]
rs594594	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs596118	0.83[ASN][1000 genomes]
rs598857	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs615718	0.83[ASN][1000 genomes]
rs61857002	0.90[ASN][1000 genomes]
rs61859667	0.82[ASN][1000 genomes]
rs624359	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs628330	0.83[ASN][1000 genomes]
rs633029	0.83[ASN][1000 genomes]
rs633400	0.80[ASN][1000 genomes]
rs637255	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs647617	0.80[ASN][1000 genomes]
rs650873	0.83[ASN][1000 genomes]
rs656126	0.82[EUR][1000 genomes]
rs658161	0.82[EUR][1000 genomes]
rs662928	0.83[EUR][1000 genomes]
rs675628	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs688608	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7476802	0.80[EUR][1000 genomes]
rs9417261	0.86[ASN][1000 genomes]
rs9417263	0.86[ASN][1000 genomes]
rs9417264	0.83[ASN][1000 genomes]
rs9417265	0.86[ASN][1000 genomes]
rs9417267	0.83[ASN][1000 genomes]
rs9417268	0.86[ASN][1000 genomes]
rs9417283	0.81[EUR][1000 genomes]
rs9418288	0.86[ASN][1000 genomes]
rs9418289	0.86[ASN][1000 genomes]
rs9418291	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9418294	0.86[ASN][1000 genomes]
rs9418297	1.00[ASN][1000 genomes]
rs9418298	1.00[ASN][1000 genomes]
rs9418299	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38155600-38176200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:38156000-38157800	Weak transcription	HepG2	liver

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