Variant report

Variant	rs1208573
Chromosome Location	chr10:38229972-38229973
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10764149	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1148287	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1208555	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1208556	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1208560	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1208587	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1208591	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1208601	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1208633	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1208645	0.87[EUR][1000 genomes]
rs1208658	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1208683	0.83[EUR][1000 genomes]
rs1208695	0.86[EUR][1000 genomes]
rs1208716	0.84[EUR][1000 genomes]
rs1208770	0.85[EUR][1000 genomes]
rs1208779	0.87[EUR][1000 genomes]
rs1212108	0.87[EUR][1000 genomes]
rs1212617	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12267169	0.85[EUR][1000 genomes]
rs1735621	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1735629	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1735641	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1742235	0.85[EUR][1000 genomes]
rs1779068	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1779075	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2144848	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2472149	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2474548	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2505220	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2505233	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2505255	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2738185	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2738208	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2738210	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2749563	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2749586	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2749588	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2749589	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2753877	0.84[EUR][1000 genomes]
rs2753880	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs594594	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs598857	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs624359	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs637255	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs656126	0.84[EUR][1000 genomes]
rs658161	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs662928	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs675628	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs688608	0.84[EUR][1000 genomes]
rs9417283	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv1052703	chr10:38174640-38266472	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38201400-38234200	Weak transcription	Left Ventricle	heart
2	chr10:38201400-38240000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:38203200-38233600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:38206600-38231800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:38220800-38241000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:38221400-38234200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:38223400-38241000	Weak transcription	Brain Angular Gyrus	brain
8	chr10:38223600-38240600	Weak transcription	Aorta	Aorta
9	chr10:38227400-38241000	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:38227400-38241600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr10:38227600-38238000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr10:38227800-38239200	Weak transcription	Adipose Nuclei	Adipose
13	chr10:38228000-38231400	Weak transcription	Brain Anterior Caudate	brain
14	chr10:38229400-38238000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr10:38229400-38241000	Weak transcription	Fetal Brain Male	brain
16	chr10:38229600-38233200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:38229600-38240600	Weak transcription	Right Ventricle	heart

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