Variant report

Variant	rs1148287
Chromosome Location	chr10:38135897-38135898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38134272..38136728-chr10:38290554..38293153,2	K562	blood:
2	chr10:38105639..38107240-chr10:38135599..38138285,2	K562	blood:

Extended variants
information (count: 158 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs1007133	0.90[ASN][1000 genomes]
rs10764149	0.87[EUR][1000 genomes]
rs10827823	0.82[ASN][1000 genomes]
rs10827824	0.82[ASN][1000 genomes]
rs10827825	0.82[ASN][1000 genomes]
rs10827828	0.83[ASN][1000 genomes]
rs10827829	0.86[ASN][1000 genomes]
rs10827831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11011346	0.82[EUR][1000 genomes]
rs11011354	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11011355	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11011363	0.83[ASN][1000 genomes]
rs11011366	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11011370	0.83[ASN][1000 genomes]
rs11011372	0.83[ASN][1000 genomes]
rs11011384	1.00[ASN][1000 genomes]
rs11011401	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11011405	0.90[ASN][1000 genomes]
rs11011426	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11011431	0.83[ASN][1000 genomes]
rs11492508	0.83[ASN][1000 genomes]
rs11511139	0.82[ASN][1000 genomes]
rs11511141	0.82[ASN][1000 genomes]
rs11516808	0.80[ASN][1000 genomes]
rs11523837	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11594000	0.83[ASN][1000 genomes]
rs11595684	0.83[ASN][1000 genomes]
rs11597286	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1208555	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1208556	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1208560	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1208573	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1208587	0.95[CEU][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1208591	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1208601	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1208633	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1208645	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1208658	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1208683	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1208695	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1208716	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1208770	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1208779	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1209425	0.83[AFR][1000 genomes]
rs1212108	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1212617	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12267169	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12358094	0.82[ASN][1000 genomes]
rs12358108	0.82[ASN][1000 genomes]
rs12359608	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12360411	0.82[ASN][1000 genomes]
rs12570939	0.82[ASN][1000 genomes]
rs12571785	0.90[ASN][1000 genomes]
rs12571820	0.82[ASN][1000 genomes]
rs12763390	0.83[ASN][1000 genomes]
rs12763409	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12768276	0.83[ASN][1000 genomes]
rs12768391	0.83[ASN][1000 genomes]
rs12776092	0.83[EUR][1000 genomes]
rs12781703	0.82[ASN][1000 genomes]
rs12782327	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12783666	0.82[ASN][1000 genomes]
rs12783722	0.82[ASN][1000 genomes]
rs1322319	1.00[ASN][1000 genomes]
rs1735621	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1735629	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1735641	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1742235	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1779015	0.82[ASN][1000 genomes]
rs1779068	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1779075	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1779150	0.82[ASN][1000 genomes]
rs2092993	0.90[ASN][1000 genomes]
rs2092995	0.83[ASN][1000 genomes]
rs2103936	0.83[ASN][1000 genomes]
rs2144845	0.88[ASN][1000 genomes]
rs2144848	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2245081	0.83[ASN][1000 genomes]
rs2295872	1.00[ASN][1000 genomes]
rs2472149	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2474548	0.87[EUR][1000 genomes]
rs2474549	0.83[ASN][1000 genomes]
rs2505233	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2738185	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2738186	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2738187	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2738190	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2738191	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2738193	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2738207	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2738208	0.90[CEU][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs2738209	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2738210	0.82[EUR][1000 genomes]
rs2738219	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2738222	0.90[ASN][1000 genomes]
rs2749559	0.90[ASN][1000 genomes]
rs2749563	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2749575	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2749577	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2749586	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2749587	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2749588	0.94[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2749589	0.95[CEU][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2749593	0.83[ASN][1000 genomes]
rs2753877	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2753878	0.90[ASN][1000 genomes]
rs2753879	0.90[ASN][1000 genomes]
rs2753880	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2753882	0.90[ASN][1000 genomes]
rs2799495	0.90[ASN][1000 genomes]
rs2799496	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2799499	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2799501	0.93[ASN][1000 genomes]
rs2799505	0.90[ASN][1000 genomes]
rs2799506	0.90[ASN][1000 genomes]
rs2799507	0.90[ASN][1000 genomes]
rs2799509	0.90[ASN][1000 genomes]
rs2891586	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs35951606	0.83[ASN][1000 genomes]
rs3824584	0.83[ASN][1000 genomes]
rs3824585	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs594594	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs596118	0.83[ASN][1000 genomes]
rs598857	0.85[EUR][1000 genomes]
rs615718	0.83[ASN][1000 genomes]
rs61857002	0.90[ASN][1000 genomes]
rs61859667	0.82[ASN][1000 genomes]
rs624359	0.90[CEU][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs628330	0.83[ASN][1000 genomes]
rs633029	0.83[ASN][1000 genomes]
rs633400	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs637255	0.90[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs647617	0.80[ASN][1000 genomes]
rs650873	0.83[ASN][1000 genomes]
rs656126	0.83[EUR][1000 genomes]
rs658161	0.82[EUR][1000 genomes]
rs662928	0.85[CEU][hapmap];0.81[CHB][hapmap];0.83[EUR][1000 genomes]
rs675628	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs688608	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7476802	0.82[EUR][1000 genomes]
rs9417261	0.86[ASN][1000 genomes]
rs9417263	0.86[ASN][1000 genomes]
rs9417264	0.83[ASN][1000 genomes]
rs9417265	0.86[ASN][1000 genomes]
rs9417267	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9417268	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9417283	0.81[EUR][1000 genomes]
rs9418288	0.86[ASN][1000 genomes]
rs9418289	0.86[ASN][1000 genomes]
rs9418291	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9418294	0.86[ASN][1000 genomes]
rs9418297	1.00[ASN][1000 genomes]
rs9418298	1.00[ASN][1000 genomes]
rs9418299	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38115600-38138200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:38116200-38137800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:38123000-38144400	Weak transcription	NHEK	skin
4	chr10:38124000-38144400	Weak transcription	NH-A	brain
5	chr10:38125200-38144400	Weak transcription	Psoas Muscle	Psoas
6	chr10:38125600-38142800	Weak transcription	NHDF-Ad	bronchial
7	chr10:38125800-38143200	Weak transcription	HepG2	liver
8	chr10:38125800-38144400	Weak transcription	HMEC	breast
9	chr10:38126600-38145600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:38126800-38144800	Weak transcription	Thymus	Thymus
11	chr10:38127000-38142800	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:38127000-38143600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:38127000-38143600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:38127000-38143800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr10:38127000-38144200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr10:38127000-38144400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:38127000-38144400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr10:38127000-38144400	Weak transcription	HSMMtube	muscle
19	chr10:38127000-38144600	Weak transcription	K562	blood
20	chr10:38127000-38145200	Weak transcription	Gastric	stomach
21	chr10:38127000-38145600	Weak transcription	Colonic Mucosa	Colon
22	chr10:38127200-38143000	Weak transcription	Brain Hippocampus Middle	brain
23	chr10:38127200-38144400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:38127200-38144400	Weak transcription	Osteobl	bone
25	chr10:38127200-38145800	Weak transcription	Placenta	Placenta
26	chr10:38127400-38142800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr10:38127400-38143000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:38127400-38143600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr10:38127400-38144000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr10:38127400-38144000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr10:38127400-38144400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:38127400-38144400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr10:38127600-38143400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:38127600-38143400	Weak transcription	Brain Anterior Caudate	brain
35	chr10:38127600-38145200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:38127800-38143400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr10:38128000-38137600	Weak transcription	Brain Angular Gyrus	brain
38	chr10:38128000-38144400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:38128200-38137000	Weak transcription	Pancreas	Pancrea
40	chr10:38128200-38143800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr10:38128200-38144400	Weak transcription	Left Ventricle	heart
42	chr10:38128400-38145000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr10:38128600-38137200	Weak transcription	Primary T cells from cord blood	blood
44	chr10:38128800-38143200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:38128800-38145400	Weak transcription	Primary B cells from cord blood	blood
46	chr10:38129400-38143600	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr10:38129800-38142800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr10:38130000-38137400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr10:38132000-38141200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr10:38132000-38144400	Weak transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links