Variant report

Variant	rs1208591
Chromosome Location	chr10:38212502-38212503
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10764149	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10827831	0.90[JPT][hapmap]
rs11011354	0.90[JPT][hapmap]
rs11011355	0.90[JPT][hapmap]
rs11011366	0.90[JPT][hapmap]
rs11011401	0.90[JPT][hapmap]
rs11011426	0.90[JPT][hapmap]
rs1148287	0.95[CEU][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11523837	0.90[JPT][hapmap]
rs11597286	0.90[JPT][hapmap]
rs11598044	1.00[JPT][hapmap]
rs1208555	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1208556	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1208560	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1208573	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1208587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1208601	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1208633	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1208645	0.95[CEU][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs1208658	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1208683	0.90[JPT][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs1208695	0.86[EUR][1000 genomes]
rs1208716	0.84[EUR][1000 genomes]
rs1208770	0.85[EUR][1000 genomes]
rs1208779	0.87[EUR][1000 genomes]
rs1212108	0.89[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs1212617	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12267169	0.85[EUR][1000 genomes]
rs12359608	0.90[JPT][hapmap]
rs12763409	1.00[JPT][hapmap]
rs12782327	1.00[JPT][hapmap]
rs1735621	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1735629	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1735641	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1742235	0.85[EUR][1000 genomes]
rs1779068	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1779075	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2144848	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2472149	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2474548	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2505220	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2505233	0.95[CEU][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2505255	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2738185	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2738186	0.90[JPT][hapmap]
rs2738187	0.90[JPT][hapmap]
rs2738190	0.90[JPT][hapmap]
rs2738191	0.90[JPT][hapmap]
rs2738193	0.86[JPT][hapmap]
rs2738207	0.90[JPT][hapmap]
rs2738208	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2738209	0.90[JPT][hapmap]
rs2738210	0.83[EUR][1000 genomes]
rs2738219	0.90[JPT][hapmap]
rs2749563	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2749575	0.90[JPT][hapmap]
rs2749577	0.90[JPT][hapmap]
rs2749586	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2749587	0.90[JPT][hapmap]
rs2749588	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2749589	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2753877	0.84[EUR][1000 genomes]
rs2753880	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2799496	0.90[JPT][hapmap]
rs2799499	0.90[JPT][hapmap]
rs2891586	1.00[JPT][hapmap]
rs3824585	0.90[JPT][hapmap]
rs594594	0.89[CEU][hapmap];0.89[CHB][hapmap];0.81[LWK][hapmap];0.88[TSI][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs598857	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs624359	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs633400	0.90[JPT][hapmap]
rs637255	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs656126	0.84[EUR][1000 genomes]
rs658161	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs662928	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs675628	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs688608	0.89[CEU][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes]
rs9417267	0.90[JPT][hapmap]
rs9417268	0.90[JPT][hapmap]
rs9417283	0.83[EUR][1000 genomes]
rs9418299	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv1052703	chr10:38174640-38266472	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1208591	ZNF25	cis	multi-tissue	Pritchard

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38201400-38234200	Weak transcription	Left Ventricle	heart
2	chr10:38201400-38240000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:38203200-38233600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:38206600-38231800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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