Variant report

Variant	rs2738191
Chromosome Location	chr10:38265786-38265787
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIX5	chr10:38265411-38265861	GM12878	blood:	n/a	n/a
2	CTCF	chr10:38265581-38265863	GM13977	blood:	n/a	chr10:38265708-38265726 chr10:38265709-38265725 chr10:38265711-38265724
3	CBX3	chr10:38265502-38265933	K562	blood:	n/a	n/a
4	TBL1XR1	chr10:38265157-38266036	K562	blood:	n/a	n/a
5	CTCF	chr10:38265640-38265790	HMEC	breast:	n/a	chr10:38265708-38265726 chr10:38265709-38265725 chr10:38265711-38265724
6	SIX5	chr10:38265447-38265908	H1-hESC	embryonic stem cell:	n/a	n/a
7	RELA	chr10:38265103-38265937	GM15510	blood:	n/a	n/a
8	TBP	chr10:38264337-38265911	K562	blood:	n/a	n/a
9	ELF1	chr10:38265207-38265944	GM12878	blood:	n/a	chr10:38265345-38265357
10	PAX5	chr10:38265257-38265928	GM12878	blood:	n/a	chr10:38265669-38265678
11	CREB1	chr10:38264947-38265932	K562	blood:	n/a	n/a
12	YY1	chr10:38264994-38265959	GM12878	blood:	n/a	chr10:38265643-38265665 chr10:38265292-38265306 chr10:38265642-38265658 chr10:38265289-38265303
13	RAD21	chr10:38265489-38265831	K562	blood:	n/a	chr10:38265709-38265728
14	SETDB1	chr10:38265661-38266137	U2OS	brain:	n/a	n/a
15	EP300	chr10:38264747-38266136	GM12878	blood:	n/a	chr10:38265672-38265688
16	POLR2A	chr10:38265018-38265913	U87	brain:	n/a	n/a
17	CCNT2	chr10:38265025-38265859	K562	blood:	n/a	n/a
18	SIX5	chr10:38265398-38265889	H1-hESC	embryonic stem cell:	n/a	n/a
19	CTCF	chr10:38265640-38265790	SAEC	small airway:	n/a	chr10:38265708-38265726 chr10:38265709-38265725 chr10:38265711-38265724
20	CTCF	chr10:38265640-38265790	HUVEC	blood vessel:	n/a	chr10:38265708-38265726 chr10:38265709-38265725 chr10:38265711-38265724
21	POLR2A	chr10:38264498-38265943	Hela-S3	cervix:	n/a	n/a
22	MXI1	chr10:38265061-38265949	HepG2	liver:	n/a	n/a
23	MYC	chr10:38264645-38265858	K562	blood:	n/a	n/a
24	NFIC	chr10:38264986-38265806	ECC-1	luminal epithelium:	n/a	n/a
25	CTCF	chr10:38265549-38265877	NHEK	skin:	n/a	chr10:38265708-38265726 chr10:38265709-38265725 chr10:38265711-38265724
26	MAFK	chr10:38265475-38265842	K562	blood:	n/a	n/a
27	CTCF	chr10:38265660-38265810	GM12874	blood:	n/a	chr10:38265708-38265726 chr10:38265709-38265725 chr10:38265711-38265724
28	POLR2A	chr10:38264900-38266013	HUVEC	blood vessel:	n/a	n/a
29	CTCF	chr10:38265575-38265851	H1-hESC	embryonic stem cell:	n/a	chr10:38265708-38265726 chr10:38265709-38265725 chr10:38265711-38265724
30	FOXM1	chr10:38265448-38265911	GM12878	blood:	n/a	chr10:38265644-38265652
31	TAF1	chr10:38264887-38265949	A549	lung:	n/a	n/a
32	SIN3AK20	chr10:38265493-38265818	A549	lung:	n/a	n/a
33	YY1	chr10:38264899-38266075	SK-N-SH	brain:	n/a	chr10:38265643-38265665 chr10:38265292-38265306 chr10:38265642-38265658 chr10:38265289-38265303
34	MAX	chr10:38264998-38265952	SK-N-SH	brain:	n/a	n/a
35	POLR2A	chr10:38265643-38265867	A549	lung:	n/a	n/a
36	CHD2	chr10:38265072-38265833	HepG2	liver:	n/a	n/a
37	ARID3A	chr10:38265419-38265852	K562	blood:	n/a	n/a
38	CTCF	chr10:38265551-38265908	GM12878	blood:	n/a	chr10:38265708-38265726 chr10:38265709-38265725 chr10:38265711-38265724
39	SIN3AK20	chr10:38264938-38265928	SK-N-SH	brain:	n/a	n/a
40	RCOR1	chr10:38265335-38265837	Hela-S3	cervix:	n/a	n/a
41	CTCF	chr10:38265573-38265881	K562	blood:	n/a	chr10:38265708-38265726 chr10:38265709-38265725 chr10:38265711-38265724
42	SIX5	chr10:38265392-38265873	GM12878	blood:	n/a	n/a
43	POLR2A	chr10:38264925-38265952	U87	brain:	n/a	n/a
44	CTCF	chr10:38265680-38265830	GM12866	blood:	n/a	chr10:38265708-38265726 chr10:38265709-38265725 chr10:38265711-38265724
45	CTCF	chr10:38265569-38265871	MCF-7	breast:	n/a	chr10:38265708-38265726 chr10:38265709-38265725 chr10:38265711-38265724
46	CTCF	chr10:38265700-38265850	HAc	cerebellar:	n/a	chr10:38265708-38265726 chr10:38265709-38265725 chr10:38265711-38265724
47	BCLAF1	chr10:38265094-38265952	GM12878	blood:	n/a	chr10:38265719-38265727 chr10:38265205-38265218
48	CTCF	chr10:38265660-38265810	BJ	skin:	n/a	chr10:38265708-38265726 chr10:38265709-38265725 chr10:38265711-38265724
49	POLR2A	chr10:38264492-38266105	PBDE	blood:	n/a	n/a
50	MYBL2	chr10:38265115-38265987	HepG2	liver:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:38265764-38265814	HUVEC	blood vessel:	n/a
2	chr10:38265764-38265814	AG10803	skin:	n/a
3	chr10:38265764-38265814	HNPCEpiC	eye:	n/a
4	chr10:38265764-38265814	GM19239	blood:	n/a
5	chr10:38265764-38265814	HPAEpiC	pulmonary alveolar:	n/a
6	chr10:38265764-38265814	PANC-1	pancreas:	n/a
7	chr10:38265764-38265814	MCF-7	breast:	n/a
8	chr10:38265764-38265814	AG04450	lung:	fetal
9	chr10:38265764-38265814	NHDF-neo	bronchial:	n/a
10	chr10:38265764-38265814	RPTEC	kidney:	n/a
11	chr10:38265764-38265814	HRPEpiC	eye:	n/a
12	chr10:38265764-38265814	A549	lung:	n/a
13	chr10:38265764-38265814	H1-hESC	embryonic stem cell:	embryo
14	chr10:38265764-38265814	NB4	blood:	n/a
15	chr10:38265764-38265814	BE2_C	brain:	n/a
16	chr10:38265764-38265814	ovcar-3	ovarian:	n/a
17	chr10:38265764-38265814	GM06990	blood:	n/a
18	chr10:38265764-38265814	CMK	blood:	n/a
19	chr10:38265764-38265814	U87	brain:	n/a
20	chr10:38265764-38265814	SAEC	small airway:	n/a
21	chr10:38265764-38265814	HL-60	blood:	n/a
22	chr10:38265764-38265814	NHBE	bronchial:	n/a
23	chr10:38265764-38265814	AG04449	skin:	fetal
24	chr10:38265764-38265814	HCT-116	colon:	n/a
25	chr10:38265764-38265814	SK-N-MC	brain:	n/a
26	chr10:38265764-38265814	HMEC	breast:	n/a
27	chr10:38265764-38265814	ProgFib	skin:	n/a
28	chr10:38265764-38265814	AG09309	skin:	n/a
29	chr10:38265764-38265814	IMR90	lung:	fetal
30	chr10:38265764-38265814	HIPEpiC	eye:	n/a
31	chr10:38265764-38265814	HRE	kidney:	n/a
32	chr10:38265764-38265814	GM12892	blood:	n/a
33	chr10:38265764-38265814	HCPEpiC	choroid plexus:	n/a
34	chr10:38265764-38265814	HAEpiC	amniotic membrane:	n/a
35	chr10:38265764-38265814	GM12878	blood:	n/a
36	chr10:38265764-38265814	K562	blood:	n/a
37	chr10:38265764-38265814	Caco-2	colon:	n/a
38	chr10:38265764-38265814	T-47D	breast:	n/a
39	chr10:38265764-38265814	NT2-D1	testis:	n/a
40	chr10:38265764-38265814	GM12891	blood:	n/a
41	chr10:38265764-38265814	AG09319	gingival:	n/a
42	chr10:38265764-38265814	MCF10A-Er-Src	breast:	n/a
43	chr10:38265764-38265814	PrEC	prostate:	n/a
44	chr10:38265764-38265814	BJ	skin:	n/a
45	chr10:38265764-38265814	SK-N-SH_RA	brain:	n/a
46	chr10:38265764-38265814	HEK293	kidney:	embryo
47	chr10:38265764-38265814	LNCaP	prostate:	n/a
48	chr10:38265764-38265814	HRCEpiC	kidney:	n/a
49	chr10:38265764-38265814	ECC-1	luminal epithelium:	n/a
50	chr10:38265764-38265814	NH-A	brain:	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:38145545..38147887-chr10:38265015..38266536,2	MCF-7	breast:
2	chr10:38265633..38266136-chr8:92081808..92082671,2	NB4	blood:
3	chr10:38264781..38267519-chr10:38298501..38300973,4	MCF-7	breast:
4	chr10:38265059..38265906-chr3:73160110..73160623,2	NB4	blood:
5	chr10:38265234..38266133-chrX:47050061..47050628,2	NB4	blood:
6	chr10:38264914..38266697-chr10:38299677..38301313,2	K562	blood:
7	chr10:38145553..38148128-chr10:38264831..38267581,3	K562	blood:
8	chr10:38265225..38265930-chr10:38382980..38383712,3	K562	blood:
9	chr10:38262821..38267029-chr10:38297888..38300843,9	MCF-7	breast:
10	chr10:38265211..38265963-chr19:12902008..12902797,2	Hela-S3	cervix:
11	chr10:38144757..38148220-chr10:38264242..38266228,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF33A-1	chr10:38265753-38265933	ENSG00000226447

Variant related genes	Relation type
ZNF25	TF binding region
ZNF25	CpG island
ENSG00000171223	Chromatin interaction
ENSG00000155100	Chromatin interaction
ENSG00000253738	Chromatin interaction
ENSG00000130985	Chromatin interaction
ENSG00000198105	Chromatin interaction
ENSG00000075407	Chromatin interaction
ENSG00000236514	Chromatin interaction
ENSG00000189180	Chromatin interaction
ENSG00000223247	Chromatin interaction

Extended variants
information (count: 131 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs1007133	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10827825	0.85[EUR][1000 genomes]
rs10827828	0.85[EUR][1000 genomes]
rs10827829	0.83[EUR][1000 genomes]
rs10827831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs10827844	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11011363	0.80[EUR][1000 genomes]
rs11011366	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs11011370	0.83[EUR][1000 genomes]
rs11011372	0.85[EUR][1000 genomes]
rs11011384	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11011401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11011405	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11011426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.84[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11011431	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1148287	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11492508	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11511139	0.82[EUR][1000 genomes]
rs11511141	0.80[EUR][1000 genomes]
rs11523837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11594000	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11595684	0.85[EUR][1000 genomes]
rs11597286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs11598044	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11599689	0.85[EUR][1000 genomes]
rs1208587	0.90[JPT][hapmap]
rs1208633	0.80[ASN][1000 genomes]
rs1208645	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap]
rs1208683	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs1212108	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12357256	0.92[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12359608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12571785	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12763390	0.85[EUR][1000 genomes]
rs12763409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs12768276	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12782327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1322319	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1735621	0.87[ASN][1000 genomes]
rs1735629	0.90[ASN][1000 genomes]
rs1735641	0.90[ASN][1000 genomes]
rs1779075	0.85[ASN][1000 genomes]
rs2092993	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2092995	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2103936	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2142346	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2144845	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2245081	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2295872	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2474549	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2474606	1.00[CHB][hapmap];0.89[CHD][hapmap]
rs2505233	0.90[JPT][hapmap]
rs2505255	0.85[ASN][1000 genomes]
rs2738186	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2738187	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2738190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2738193	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2738207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2738208	0.90[JPT][hapmap]
rs2738209	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2738210	0.83[ASN][1000 genomes]
rs2738219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2738222	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2749559	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2749569	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2749575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2749577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2749587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2749588	0.81[JPT][hapmap]
rs2749589	0.90[JPT][hapmap]
rs2749593	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2753878	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2753879	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2753880	0.90[ASN][1000 genomes]
rs2753882	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2799495	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2799496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2799499	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2799501	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2799502	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2799505	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2799506	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2799507	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2799509	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2891586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs35951606	0.85[EUR][1000 genomes]
rs3824584	0.85[EUR][1000 genomes]
rs3824585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs594594	1.00[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs596118	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs615718	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs615974	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61857002	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61858886	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs624359	0.90[JPT][hapmap]
rs628330	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs633029	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs633400	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs637255	0.90[JPT][hapmap]
rs647617	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs650873	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs656126	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs662928	0.81[JPT][hapmap]
rs675628	0.97[ASN][1000 genomes]
rs688608	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7077222	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7077233	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72639538	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9417261	0.83[EUR][1000 genomes]
rs9417262	0.82[EUR][1000 genomes]
rs9417263	0.84[EUR][1000 genomes]
rs9417264	0.83[EUR][1000 genomes]
rs9417265	0.84[EUR][1000 genomes]
rs9417267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs9417268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs9417282	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9417283	0.83[ASN][1000 genomes]
rs9418288	0.83[EUR][1000 genomes]
rs9418289	0.83[EUR][1000 genomes]
rs9418294	0.84[EUR][1000 genomes]
rs9418297	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9418298	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9418299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv1052703	chr10:38174640-38266472	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv534122	chr10:38240258-38356008	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38264000-38265800	Active TSS	Fetal Brain Female	brain
2	chr10:38264000-38266200	Active TSS	NHLF	lung
3	chr10:38264200-38265800	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr10:38264200-38265800	Active TSS	Skeletal Muscle Male	skeletal muscle
5	chr10:38264200-38266000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:38264200-38266200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:38264200-38266200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:38264200-38266200	Active TSS	Brain Angular Gyrus	brain
9	chr10:38264200-38266200	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr10:38264200-38266200	Active TSS	HepG2	liver
11	chr10:38264200-38266400	Active TSS	A549	lung
12	chr10:38264400-38265800	Active TSS	H9 Cell Line	embryonic stem cell
13	chr10:38264400-38265800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:38264400-38265800	Active TSS	HSMMtube	muscle
15	chr10:38264400-38266000	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr10:38264400-38266000	Active TSS	Breast Myoepithelial Primary Cells	Breast
17	chr10:38264400-38266000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:38264400-38266000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:38264400-38266000	Active TSS	Aorta	Aorta
20	chr10:38264400-38266000	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr10:38264400-38266000	Active TSS	Fetal Kidney	kidney
22	chr10:38264400-38266000	Active TSS	Psoas Muscle	Psoas
23	chr10:38264400-38266000	Active TSS	Sigmoid Colon	Sigmoid Colon
24	chr10:38264400-38266200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:38264400-38266200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:38264400-38266200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr10:38264400-38266200	Active TSS	Colonic Mucosa	Colon
28	chr10:38264400-38266200	Active TSS	Fetal Intestine Large	intestine
29	chr10:38264400-38266200	Active TSS	Fetal Stomach	stomach
30	chr10:38264400-38266200	Active TSS	HSMM	muscle
31	chr10:38264400-38266200	Active TSS	NH-A	brain
32	chr10:38264400-38266200	Active TSS	NHDF-Ad	bronchial
33	chr10:38264400-38266400	Active TSS	Brain Anterior Caudate	brain
34	chr10:38264600-38265800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr10:38264600-38266000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr10:38264600-38266000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:38264600-38266000	Active TSS	Esophagus	oesophagus
38	chr10:38264600-38266000	Active TSS	Fetal Muscle Trunk	muscle
39	chr10:38264600-38266000	Active TSS	Gastric	stomach
40	chr10:38264600-38266000	Active TSS	Lung	lung
41	chr10:38264600-38266000	Active TSS	Ovary	ovary
42	chr10:38264600-38266000	Active TSS	Pancreas	Pancrea
43	chr10:38264600-38266200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr10:38264600-38266200	Active TSS	Placenta	Placenta
45	chr10:38264800-38265800	Active TSS	H1 Cell Line	embryonic stem cell
46	chr10:38264800-38265800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr10:38264800-38265800	Active TSS	iPS-15b Cell Line	embryonic stem cell
48	chr10:38264800-38265800	Active TSS	iPS-20b Cell Line	embryonic stem cell
49	chr10:38264800-38265800	Active TSS	Duodenum Mucosa	Duodenum
50	chr10:38264800-38265800	Active TSS	K562	blood

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