Variant report

Variant	rs9417262
Chromosome Location	chr10:38112202-38112203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38092192..38094710-chr10:38111605..38114587,2	K562	blood:

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs1007133	0.82[EUR][1000 genomes]
rs10827823	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10827824	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10827825	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10827828	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10827829	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10827831	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11011326	0.83[EUR][1000 genomes]
rs11011328	0.83[EUR][1000 genomes]
rs11011330	0.84[EUR][1000 genomes]
rs11011331	0.84[EUR][1000 genomes]
rs11011334	0.83[EUR][1000 genomes]
rs11011354	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11011355	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11011363	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11011366	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11011370	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11011372	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11011378	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11492508	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11511139	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11511141	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11516808	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11523837	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11595684	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11597286	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11599689	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1208645	0.89[ASN][1000 genomes]
rs1208683	0.84[ASN][1000 genomes]
rs1208695	0.86[ASN][1000 genomes]
rs1208716	0.86[ASN][1000 genomes]
rs1208770	0.84[ASN][1000 genomes]
rs1208779	0.86[ASN][1000 genomes]
rs1209425	0.81[ASN][1000 genomes]
rs1212108	0.86[ASN][1000 genomes]
rs12267169	0.84[ASN][1000 genomes]
rs12357391	0.81[ASN][1000 genomes]
rs12357418	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12358094	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12358108	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12359608	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12360411	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12570939	0.84[ASN][1000 genomes]
rs12571820	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12763390	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12763409	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12768391	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12781703	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12782327	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12783666	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12783722	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1322319	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1742235	0.84[ASN][1000 genomes]
rs1779015	0.84[ASN][1000 genomes]
rs1779150	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2076809	0.81[ASN][1000 genomes]
rs2092993	0.82[EUR][1000 genomes]
rs2092995	0.82[EUR][1000 genomes]
rs2103936	0.82[EUR][1000 genomes]
rs2144845	0.82[EUR][1000 genomes]
rs2245081	0.82[EUR][1000 genomes]
rs2295872	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2738186	0.82[EUR][1000 genomes]
rs2738187	0.82[EUR][1000 genomes]
rs2738191	0.82[EUR][1000 genomes]
rs2738193	0.82[EUR][1000 genomes]
rs2738219	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2738222	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2749587	0.82[EUR][1000 genomes]
rs2749593	0.82[EUR][1000 genomes]
rs2753877	0.84[ASN][1000 genomes]
rs2753878	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2799496	0.81[EUR][1000 genomes]
rs2799501	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2799505	0.82[EUR][1000 genomes]
rs2799506	0.82[EUR][1000 genomes]
rs2799507	0.82[EUR][1000 genomes]
rs2891586	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34496143	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35951606	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3824584	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3824585	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61858625	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61858626	0.81[ASN][1000 genomes]
rs61859667	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61859679	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72639533	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9417261	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9417263	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9417264	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9417265	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9417267	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9417268	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9418288	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9418289	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9418291	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9418294	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9418297	0.83[AMR][1000 genomes]
rs9418298	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9418299	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38103800-38118000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:38109600-38116000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:38109600-38116200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:38111000-38115800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:38111200-38117200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:38111200-38118400	Weak transcription	HepG2	liver
7	chr10:38112000-38114200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:38112000-38114400	Weak transcription	Primary T cells from cord blood	blood
9	chr10:38112000-38115800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:38112000-38116600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:38112200-38116400	Weak transcription	Fetal Brain Male	brain

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