Variant report

Variant	rs2103936
Chromosome Location	chr10:38253333-38253334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs1007133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10827823	0.85[EUR][1000 genomes]
rs10827824	0.85[EUR][1000 genomes]
rs10827825	0.85[EUR][1000 genomes]
rs10827828	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10827829	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10827831	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10827844	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11011355	0.85[EUR][1000 genomes]
rs11011363	0.80[EUR][1000 genomes]
rs11011366	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11011370	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11011372	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11011384	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11011401	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11011405	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11011426	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011431	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1148287	0.83[ASN][1000 genomes]
rs11492508	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11511139	0.82[EUR][1000 genomes]
rs11511141	0.80[EUR][1000 genomes]
rs11594000	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595684	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11597286	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11598044	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11599689	0.85[EUR][1000 genomes]
rs1208633	0.83[ASN][1000 genomes]
rs12357256	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12360411	0.85[EUR][1000 genomes]
rs12571785	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12763390	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12763409	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12768276	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12781703	0.85[EUR][1000 genomes]
rs12782327	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1322319	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1735621	0.90[ASN][1000 genomes]
rs1735629	0.93[ASN][1000 genomes]
rs1735641	0.93[ASN][1000 genomes]
rs1779075	0.88[ASN][1000 genomes]
rs2092993	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2092995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2142346	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2144845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2245081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2295872	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2474549	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505255	0.88[ASN][1000 genomes]
rs2738186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2738187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2738190	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2738191	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2738193	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2738207	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2738209	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2738210	0.86[ASN][1000 genomes]
rs2738219	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2738222	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2749559	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2749569	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2749575	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2749577	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2749587	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2749593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2753878	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2753879	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2753880	0.93[ASN][1000 genomes]
rs2753882	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2799495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2799496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2799499	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2799501	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2799502	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2799505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2799506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2799507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2799509	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2891586	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35951606	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3824584	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3824585	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs594594	1.00[ASN][1000 genomes]
rs596118	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs615718	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs615974	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61857002	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61858886	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs628330	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs633029	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs633400	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs647617	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs650873	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs656126	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs675628	1.00[ASN][1000 genomes]
rs688608	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7077222	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7077233	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72639538	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9417261	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9417262	0.82[EUR][1000 genomes]
rs9417263	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9417264	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9417265	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9417267	0.82[EUR][1000 genomes]
rs9417268	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9417282	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9417283	0.86[ASN][1000 genomes]
rs9418288	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9418289	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9418294	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9418297	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9418298	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9418299	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv1052703	chr10:38174640-38266472	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv534122	chr10:38240258-38356008	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38239600-38264400	Weak transcription	Fetal Heart	heart
2	chr10:38239600-38264600	Weak transcription	Stomach Mucosa	stomach
3	chr10:38240800-38264000	Weak transcription	NHLF	lung
4	chr10:38241800-38264400	Weak transcription	NHEK	skin
5	chr10:38242200-38253600	Weak transcription	Esophagus	oesophagus
6	chr10:38242200-38253800	Weak transcription	Pancreas	Pancrea
7	chr10:38242400-38253400	Weak transcription	Spleen	Spleen
8	chr10:38242400-38253600	Weak transcription	Gastric	stomach
9	chr10:38242600-38264400	Weak transcription	HUVEC	blood vessel
10	chr10:38243000-38253600	Weak transcription	Right Ventricle	heart
11	chr10:38243400-38253800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:38243600-38256000	Weak transcription	HSMMtube	muscle
13	chr10:38244000-38253800	Weak transcription	Aorta	Aorta
14	chr10:38244200-38253400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:38245200-38253600	Weak transcription	NH-A	brain
16	chr10:38245200-38253800	Weak transcription	Fetal Intestine Large	intestine
17	chr10:38245400-38253400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:38245800-38253600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:38245800-38256000	Weak transcription	Osteobl	bone
20	chr10:38246000-38253600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:38246000-38253600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr10:38246200-38253400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr10:38246400-38253600	Weak transcription	Brain Substantia Nigra	brain
24	chr10:38246400-38253800	Weak transcription	HSMM	muscle
25	chr10:38246400-38257600	Weak transcription	Psoas Muscle	Psoas
26	chr10:38246400-38264000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr10:38246400-38264400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr10:38246600-38253600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr10:38246600-38253800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr10:38247000-38253400	Weak transcription	Lung	lung
31	chr10:38247000-38253600	Weak transcription	Left Ventricle	heart
32	chr10:38247000-38263000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr10:38247200-38253800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr10:38247200-38253800	Weak transcription	Fetal Kidney	kidney
35	chr10:38247400-38253400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr10:38247400-38253600	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:38247400-38253800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr10:38247400-38257600	Weak transcription	NHDF-Ad	bronchial
39	chr10:38247800-38253400	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr10:38248000-38253400	Weak transcription	Adipose Nuclei	Adipose
41	chr10:38248200-38253400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:38248200-38253400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr10:38248400-38253400	Weak transcription	Stomach Smooth Muscle	stomach
44	chr10:38248600-38253400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr10:38249000-38254000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr10:38249200-38253400	Weak transcription	Ovary	ovary
47	chr10:38249400-38253400	Weak transcription	Fetal Muscle Trunk	muscle
48	chr10:38251800-38259200	ZNF genes & repeats	Brain Germinal Matrix	brain
49	chr10:38252200-38260000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr10:38252200-38260600	ZNF genes & repeats	Fetal Brain Female	brain

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