Variant report

Variant	rs7077222
Chromosome Location	chr10:38166320-38166321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1007133	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10827844	0.81[AMR][1000 genomes]
rs11011384	0.81[AMR][1000 genomes]
rs11011401	0.83[AMR][1000 genomes]
rs11011405	0.83[AMR][1000 genomes]
rs11594000	0.81[EUR][1000 genomes]
rs11598044	0.81[AMR][1000 genomes]
rs12571785	0.83[AMR][1000 genomes]
rs1322319	0.89[AMR][1000 genomes]
rs1735621	0.81[ASN][1000 genomes]
rs2092993	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2092995	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2103936	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2142346	0.83[AMR][1000 genomes]
rs2144845	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2245081	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2295872	0.89[AMR][1000 genomes]
rs2738186	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2738187	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2738190	0.81[AMR][1000 genomes]
rs2738191	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2738193	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2738209	0.81[EUR][1000 genomes]
rs2738219	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2738222	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2749575	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2749577	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2749587	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2749593	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2753878	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2753879	0.87[AMR][1000 genomes]
rs2753882	0.87[AMR][1000 genomes]
rs2799495	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2799496	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2799499	0.85[AMR][1000 genomes]
rs2799501	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2799502	0.91[AMR][1000 genomes]
rs2799505	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2799506	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2799507	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2799509	0.85[AMR][1000 genomes]
rs596118	0.81[EUR][1000 genomes]
rs615718	0.81[EUR][1000 genomes]
rs61857002	0.85[AMR][1000 genomes]
rs61858886	0.81[AMR][1000 genomes]
rs628330	0.81[EUR][1000 genomes]
rs633029	0.81[EUR][1000 genomes]
rs633400	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs650873	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7077233	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9418297	0.85[AMR][1000 genomes]
rs9418298	0.89[AMR][1000 genomes]
rs9418299	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38155600-38176200	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links