The 2.0 version of rSNPBase

Variant report

Variant rs1209425
Chromosome Location chr10:38113771-38113772
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:27 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:38103800-38118000 Weak transcription Brain Cingulate Gyrus brain
2 chr10:38109600-38116000 Weak transcription Skeletal Muscle Female skeletal muscle
3 chr10:38109600-38116200 Weak transcription Rectal Smooth Muscle rectum
4 chr10:38111000-38115800 Weak transcription Skeletal Muscle Male skeletal muscle
5 chr10:38111200-38117200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr10:38111200-38118400 Weak transcription HepG2 liver
7 chr10:38112000-38114200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
8 chr10:38112000-38114400 Weak transcription Primary T cells from cord blood blood
9 chr10:38112000-38115800 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr10:38112000-38116600 Weak transcription Cortex derived primary cultured neurospheres brain
11 chr10:38112200-38116400 Weak transcription Fetal Brain Male brain
12 chr10:38112800-38116000 Weak transcription Muscle Satellite Cultured Cells --
13 chr10:38112800-38116000 Weak transcription Left Ventricle heart
14 chr10:38112800-38116600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
15 chr10:38113000-38116400 Weak transcription Fetal Adrenal Gland Adrenal Gland
16 chr10:38113000-38116600 Weak transcription Brain Inferior Temporal Lobe brain
17 chr10:38113200-38114400 Weak transcription Ovary ovary
18 chr10:38113200-38116200 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr10:38113200-38116400 Weak transcription Brain Anterior Caudate brain
20 chr10:38113200-38117400 Weak transcription Fetal Heart heart
21 chr10:38113200-38118000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr10:38113400-38114400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr10:38113400-38116000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr10:38113600-38116200 Weak transcription Fetal Kidney kidney
25 chr10:38113600-38116800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr10:38113600-38117800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
27 chr10:38113600-38118000 Weak transcription Brain Substantia Nigra brain

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Last update: Aug 31, 2015