Variant report

Variant	rs12783272
Chromosome Location	chr10:38024885-38024886
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38022553..38025256-chr10:38025509..38028052,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10740949	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10764142	0.86[ASN][1000 genomes]
rs10764143	0.93[ASN][1000 genomes]
rs10764144	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10827815	0.90[ASN][1000 genomes]
rs10827818	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10827819	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10827824	0.83[AFR][1000 genomes]
rs10827825	0.83[AFR][1000 genomes]
rs11011323	0.90[ASN][1000 genomes]
rs11011324	0.89[ASN][1000 genomes]
rs11011325	0.90[ASN][1000 genomes]
rs11011339	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11011341	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11011346	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11011355	0.83[AFR][1000 genomes]
rs11597720	0.93[ASN][1000 genomes]
rs1208770	0.85[EUR][1000 genomes]
rs1208779	0.81[EUR][1000 genomes]
rs12357413	0.90[ASN][1000 genomes]
rs12360411	0.83[AFR][1000 genomes]
rs12570943	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12776092	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12781703	0.83[AFR][1000 genomes]
rs1619266	0.86[EUR][1000 genomes]
rs1742235	0.85[EUR][1000 genomes]
rs1779150	0.83[AFR][1000 genomes]
rs1830612	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2753877	0.84[EUR][1000 genomes]
rs34185758	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4934898	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61858629	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs734512	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7476802	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv975812	chr10:37990724-38084639	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv947607	chr10:38021929-38040760	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38022200-38037000	Weak transcription	HSMM	muscle
2	chr10:38023400-38026000	Enhancers	Placenta	Placenta
3	chr10:38024200-38025400	Enhancers	HepG2	liver
4	chr10:38024600-38025000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:38024800-38025200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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