Variant report

Variant	rs12570943
Chromosome Location	chr10:38022469-38022470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10740949	0.93[ASN][1000 genomes]
rs10764142	0.86[ASN][1000 genomes]
rs10764143	0.93[ASN][1000 genomes]
rs10764144	0.93[ASN][1000 genomes]
rs10827815	0.90[ASN][1000 genomes]
rs10827818	0.93[ASN][1000 genomes]
rs10827819	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10827823	0.86[EUR][1000 genomes]
rs10827824	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10827825	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10827828	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10827829	0.82[EUR][1000 genomes]
rs10827831	0.82[EUR][1000 genomes]
rs11011323	0.90[ASN][1000 genomes]
rs11011324	0.89[ASN][1000 genomes]
rs11011325	0.90[ASN][1000 genomes]
rs11011339	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11011341	0.93[ASN][1000 genomes]
rs11011346	0.98[ASN][1000 genomes]
rs11011355	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11011363	0.82[AFR][1000 genomes]
rs11011366	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11011370	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11011372	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11492508	0.82[EUR][1000 genomes]
rs11511139	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11511141	0.82[EUR][1000 genomes]
rs11595684	0.82[EUR][1000 genomes]
rs11597286	0.82[EUR][1000 genomes]
rs11597720	0.93[ASN][1000 genomes]
rs11599689	0.86[EUR][1000 genomes]
rs12357413	0.90[ASN][1000 genomes]
rs12357418	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12358094	0.86[EUR][1000 genomes]
rs12358108	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12360411	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12571820	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12763390	0.82[EUR][1000 genomes]
rs12763409	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12776092	1.00[ASN][1000 genomes]
rs12781703	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12782327	0.82[EUR][1000 genomes]
rs12783272	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12783666	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1779150	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1830612	0.93[ASN][1000 genomes]
rs2891586	0.82[EUR][1000 genomes]
rs34185758	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs34496143	0.82[AFR][1000 genomes]
rs35951606	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs3824584	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs3824585	0.82[EUR][1000 genomes]
rs4934898	0.92[ASN][1000 genomes]
rs61858625	0.82[EUR][1000 genomes]
rs61858629	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61859667	0.86[EUR][1000 genomes]
rs72639533	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs734512	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7476802	1.00[ASN][1000 genomes]
rs9417263	0.81[EUR][1000 genomes]
rs9417265	0.81[EUR][1000 genomes]
rs9417267	0.81[EUR][1000 genomes]
rs9417268	0.82[EUR][1000 genomes]
rs9418288	0.82[EUR][1000 genomes]
rs9418289	0.82[EUR][1000 genomes]
rs9418294	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv975812	chr10:37990724-38084639	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv947607	chr10:38021929-38040760	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38021200-38022600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:38021400-38022800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:38021400-38024400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:38022000-38023800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:38022200-38023400	Enhancers	A549	lung
6	chr10:38022200-38037000	Weak transcription	HSMM	muscle

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