Variant report

Variant	rs734512
Chromosome Location	chr10:37973072-37973073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10740949	1.00[ASN][1000 genomes]
rs10764142	0.93[ASN][1000 genomes]
rs10764143	1.00[ASN][1000 genomes]
rs10764144	1.00[ASN][1000 genomes]
rs10827815	0.97[ASN][1000 genomes]
rs10827818	1.00[ASN][1000 genomes]
rs10827819	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10827831	1.00[CEU][hapmap];0.81[GIH][hapmap]
rs11011323	0.97[ASN][1000 genomes]
rs11011324	0.96[ASN][1000 genomes]
rs11011325	0.97[ASN][1000 genomes]
rs11011326	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11011328	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11011330	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11011331	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11011334	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11011339	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011341	1.00[ASN][1000 genomes]
rs11011346	0.94[ASN][1000 genomes]
rs11011354	1.00[CEU][hapmap]
rs11011355	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11011366	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11492508	1.00[CEU][hapmap]
rs11523837	1.00[CEU][hapmap]
rs11597286	1.00[CEU][hapmap]
rs11597720	1.00[ASN][1000 genomes]
rs12357413	0.97[ASN][1000 genomes]
rs12357418	0.83[EUR][1000 genomes]
rs12359608	1.00[CEU][hapmap]
rs12570943	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12763409	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12776092	0.93[ASN][1000 genomes]
rs12782327	1.00[CEU][hapmap]
rs12783272	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1830612	1.00[ASN][1000 genomes]
rs2738219	1.00[CEU][hapmap]
rs2891586	1.00[CEU][hapmap]
rs34185758	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34496143	0.81[EUR][1000 genomes]
rs3824585	1.00[CEU][hapmap]
rs4934898	0.99[ASN][1000 genomes]
rs61857913	0.82[AFR][1000 genomes]
rs61858625	0.82[EUR][1000 genomes]
rs61858629	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72639533	0.83[EUR][1000 genomes]
rs7476802	0.93[ASN][1000 genomes]
rs9417267	1.00[CEU][hapmap]
rs9417268	1.00[CEU][hapmap]
rs9418299	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv6443	chr10:37949704-37995270	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv1794823	chr10:37961177-38002067	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs734512	ZNF37A	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37971800-37977600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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