Variant report

Variant	rs12356287
Chromosome Location	chr10:50498227-50498228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10857452	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11101067	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11101069	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11101070	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11101074	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11812325	0.96[EUR][1000 genomes]
rs12357223	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12357288	0.81[EUR][1000 genomes]
rs12360422	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17009340	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56828728	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7906545	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50491800-50498800	Weak transcription	Right Ventricle	heart
2	chr10:50494200-50499000	Enhancers	Fetal Muscle Leg	muscle
3	chr10:50495200-50503800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr10:50495800-50501000	Enhancers	Left Ventricle	heart
5	chr10:50496800-50503400	Weak transcription	Right Atrium	heart
6	chr10:50497000-50499400	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr10:50497200-50498600	Weak transcription	Adipose Nuclei	Adipose
8	chr10:50497800-50500000	Weak transcription	Lung	lung
9	chr10:50497800-50500000	Weak transcription	Spleen	Spleen
10	chr10:50498000-50498800	Weak transcription	Psoas Muscle	Psoas
11	chr10:50498000-50500200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr10:50498000-50504600	Weak transcription	K562	blood
13	chr10:50498200-50498800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:50498200-50499000	Bivalent Enhancer	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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