Variant report

Variant	rs7906545
Chromosome Location	chr10:50463693-50463694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50461288..50465074-chr10:50465528..50469172,3	K562	blood:
2	chr10:50462897..50464824-chr10:50509332..50512254,2	K562	blood:
3	chr10:50462244..50464154-chr10:50465883..50467890,2	K562	blood:
4	chr10:50448759..50451494-chr10:50463430..50466103,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10857452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11101067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11101069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11101070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11101074	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11812325	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12356287	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12357223	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12360422	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17009340	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56828728	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	esv3398622	chr10:50460546-50464244	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50460800-50467000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:50461200-50463800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr10:50461200-50464000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr10:50461400-50463800	Enhancers	Thymus	Thymus
5	chr10:50461400-50464200	Enhancers	Fetal Thymus	thymus
6	chr10:50461400-50466000	Enhancers	Primary B cells from peripheral blood	blood
7	chr10:50461600-50464000	Weak transcription	Psoas Muscle	Psoas
8	chr10:50462200-50463800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:50462200-50464800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr10:50462600-50464200	Enhancers	Fetal Muscle Leg	muscle
11	chr10:50463000-50464200	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr10:50463000-50478800	Weak transcription	Right Atrium	heart
13	chr10:50463200-50463800	Enhancers	Dnd41	blood
14	chr10:50463200-50464000	Enhancers	Primary T cells from cord blood	blood
15	chr10:50463200-50465200	Enhancers	Primary B cells from cord blood	blood
16	chr10:50463200-50466000	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr10:50463200-50466200	Enhancers	Primary hematopoietic stem cells	blood
18	chr10:50463200-50466400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:50463200-50470400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:50463400-50465200	Weak transcription	Spleen	Spleen
21	chr10:50463400-50466000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr10:50463600-50464200	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr10:50463600-50466400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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