Variant report

Variant	rs12360011
Chromosome Location	chr10:27968052-27968053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12358421	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928151	0.81[AFR][1000 genomes]
rs2368251	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2637278	0.90[EUR][1000 genomes]
rs2815555	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73604034	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27953600-27968800	Weak transcription	Aorta	Aorta
2	chr10:27966400-27968400	Weak transcription	Fetal Stomach	stomach
3	chr10:27966400-27968600	Enhancers	Fetal Lung	lung
4	chr10:27967000-27968800	Enhancers	Stomach Smooth Muscle	stomach
5	chr10:27967400-27968400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:27967400-27968800	Enhancers	Ovary	ovary
7	chr10:27967400-27969400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:27967400-27969400	Enhancers	Fetal Muscle Leg	muscle
9	chr10:27967400-27969800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:27967400-27970200	Enhancers	Osteobl	bone
11	chr10:27967600-27969600	Enhancers	Fetal Heart	heart
12	chr10:27967800-27968200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:27967800-27968800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:27967800-27969600	Enhancers	Adipose Nuclei	Adipose
15	chr10:27968000-27968400	Weak transcription	Colon Smooth Muscle	Colon
16	chr10:27968000-27968800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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