Variant report

Variant	rs16928151
Chromosome Location	chr10:27969273-27969274
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12358421	0.97[AFR][1000 genomes]
rs12360011	0.81[AFR][1000 genomes]
rs16928140	0.87[YRI][hapmap]
rs16928159	0.83[AFR][1000 genomes]
rs73604034	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27967400-27969400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:27967400-27969400	Enhancers	Fetal Muscle Leg	muscle
3	chr10:27967400-27969800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:27967400-27970200	Enhancers	Osteobl	bone
5	chr10:27967600-27969600	Enhancers	Fetal Heart	heart
6	chr10:27967800-27969600	Enhancers	Adipose Nuclei	Adipose
7	chr10:27968200-27969600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:27968200-27970000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr10:27968400-27969400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:27968400-27969400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:27968400-27969600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:27968400-27969600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:27968400-27969600	Enhancers	Colon Smooth Muscle	Colon
14	chr10:27968400-27971600	Enhancers	Fetal Stomach	stomach
15	chr10:27968600-27969600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:27968800-27969400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:27968800-27969400	Enhancers	Rectal Smooth Muscle	rectum
18	chr10:27968800-27969600	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr10:27968800-27970000	Enhancers	Aorta	Aorta
20	chr10:27969000-27969400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr10:27969000-27969400	Enhancers	Ovary	ovary
22	chr10:27969200-27970200	Enhancers	Fetal Lung	lung
23	chr10:27969200-27970200	Enhancers	Stomach Smooth Muscle	stomach
24	chr10:27969200-27973400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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