Variant report

Variant	rs16928159
Chromosome Location	chr10:27978181-27978182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16928140	1.00[ASW][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs16928151	0.83[AFR][1000 genomes]
rs16928167	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928213	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604034	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604047	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604049	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604050	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604051	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7901522	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27971600-27981600	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:27973000-27981400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:27977000-27981800	Weak transcription	Ovary	ovary
4	chr10:27977800-27981600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:27977800-27981600	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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