Variant report

Variant	rs73604047
Chromosome Location	chr10:28016263-28016264
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16928140	1.00[AMR][1000 genomes]
rs16928159	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928167	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604034	1.00[AMR][1000 genomes]
rs73604049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7901522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28012800-28020000	Weak transcription	Fetal Stomach	stomach
2	chr10:28013400-28016800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:28013400-28016800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:28013400-28020400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr10:28014000-28017600	Active TSS	Stomach Smooth Muscle	stomach
6	chr10:28015000-28017400	Active TSS	Ovary	ovary
7	chr10:28015400-28017400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:28015600-28017000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:28015800-28017600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:28016000-28016800	Weak transcription	Aorta	Aorta
11	chr10:28016000-28017200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr10:28016000-28017600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:28016200-28016400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:28016200-28016400	Flanking Active TSS	Osteobl	bone
15	chr10:28016200-28017200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr10:28016200-28017400	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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