Variant report

Variant	rs12361540
Chromosome Location	chr11:74861545-74861546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74860426..74862138-chr11:74866873..74869626,2	K562	blood:
2	chr11:74860782..74862620-chr11:74866728..74869676,2	MCF-7	breast:
3	chr11:74860499..74862617-chr11:74862814..74864502,2	K562	blood:

Variant related genes	Relation type
ENSG00000137491	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11236358	0.84[AMR][1000 genomes]
rs17133732	0.81[JPT][hapmap]
rs6592598	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs7119732	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs7946082	0.80[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526053	chr11:74857436-74861545	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74852000-74861600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:74853800-74862000	Enhancers	HepG2	liver
3	chr11:74853800-74862200	Enhancers	Placenta	Placenta
4	chr11:74854000-74862000	Enhancers	Fetal Intestine Large	intestine
5	chr11:74855200-74862200	Enhancers	Fetal Intestine Small	intestine
6	chr11:74855600-74861600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:74856600-74863400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:74857400-74865600	Weak transcription	Small Intestine	intestine
9	chr11:74859000-74862200	Weak transcription	Left Ventricle	heart
10	chr11:74859000-74862400	Weak transcription	Liver	Liver
11	chr11:74859000-74863800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:74859200-74861800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr11:74859200-74862200	Weak transcription	Right Atrium	heart
14	chr11:74859200-74862400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:74859200-74863200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:74859400-74862200	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr11:74859800-74862200	Weak transcription	Lung	lung
18	chr11:74860000-74864000	Weak transcription	Spleen	Spleen
19	chr11:74860400-74862000	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr11:74860600-74861600	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr11:74860600-74862000	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr11:74860600-74862200	Enhancers	Colonic Mucosa	Colon
23	chr11:74861000-74862200	Enhancers	Esophagus	oesophagus
24	chr11:74861000-74862200	Enhancers	Stomach Mucosa	stomach
25	chr11:74861000-74862400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr11:74861200-74861800	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr11:74861200-74862000	Enhancers	Fetal Muscle Leg	muscle
28	chr11:74861200-74862000	Enhancers	Fetal Thymus	thymus
29	chr11:74861200-74862000	Enhancers	Pancreas	Pancrea
30	chr11:74861200-74863600	Enhancers	Gastric	stomach
31	chr11:74861200-74868400	Active TSS	Brain Hippocampus Middle	brain
32	chr11:74861400-74862000	Enhancers	Adipose Nuclei	Adipose
33	chr11:74861400-74862000	Flanking Active TSS	Duodenum Mucosa	Duodenum
34	chr11:74861400-74862400	Enhancers	Fetal Stomach	stomach
35	chr11:74861400-74864000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
36	chr11:74861400-74866000	Active TSS	Brain Anterior Caudate	brain

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