Variant report
| Variant | rs7119732 |
|---|---|
| Chromosome Location | chr11:74787430-74787431 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| OR2AT2P | TF binding region |
| ENSG00000234611 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs11820818 | 0.81[ASN][1000 genomes] |
| rs11827488 | 0.84[CEU][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs12270538 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12288006 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12292336 | 0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12361540 | 0.80[CHB][hapmap];0.81[JPT][hapmap] |
| rs4372476 | 0.83[ASN][1000 genomes] |
| rs4944974 | 0.92[ASW][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.86[MKK][hapmap];0.87[TSI][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs55986601 | 0.84[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs60583806 | 0.93[ASN][1000 genomes] |
| rs6592598 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7946082 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv897918 | chr11:74757641-74798928 | Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription | TF binding regionChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 2 | esv3478707 | chr11:74782633-74842791 | Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
| 3 | esv3478718 | chr11:74782633-74842791 | Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv975203 | chr11:74786322-74799744 | Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:4)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7119732 | NEU3 | cis | cerebellum | SCAN |
| rs7119732 | GDPD4 | cis | cerebellum | SCAN |
| rs7119732 | FCHSD2 | cis | cerebellum | SCAN |
| rs7119732 | KCTD21 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:74785600-74788200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 2 | chr11:74787000-74788600 | Strong transcription | K562 | blood |
