Variant report

Variant	rs12361702
Chromosome Location	chr11:17483742-17483743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11024269	1.00[CEU][hapmap]
rs4148613	1.00[CEU][hapmap]
rs56179056	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs722341	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv897019	chr11:17475443-17499547	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897020	chr11:17476516-17491386	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv897021	chr11:17478157-17491386	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv897022	chr11:17478157-17496516	Enhancers Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17461200-17497400	Weak transcription	Gastric	stomach
2	chr11:17465800-17496400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:17472400-17489600	Weak transcription	Brain Substantia Nigra	brain
4	chr11:17474000-17485000	Weak transcription	Lung	lung
5	chr11:17479800-17485800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:17480200-17494000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:17480200-17494200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:17480200-17494800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:17481800-17483800	Strong transcription	Brain Cingulate Gyrus	brain
10	chr11:17481800-17483800	Strong transcription	Brain Inferior Temporal Lobe	brain
11	chr11:17481800-17485400	Strong transcription	Pancreatic Islets	Pancreatic Islet
12	chr11:17481800-17495200	Weak transcription	Brain Hippocampus Middle	brain
13	chr11:17482200-17485400	Strong transcription	Brain Angular Gyrus	brain
14	chr11:17483200-17484000	Weak transcription	Brain Germinal Matrix	brain
15	chr11:17483400-17484200	Weak transcription	Brain Anterior Caudate	brain
16	chr11:17483400-17485200	Weak transcription	Dnd41	blood
17	chr11:17483400-17489200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:17483600-17484200	Enhancers	Hela-S3	cervix
19	chr11:17483600-17486600	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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