Variant report

Variant	rs12364990
Chromosome Location	chr11:76521528-76521529
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:76495052..76496705-chr11:76519946..76522720,2	MCF-7	breast:
2	chr11:76508809..76510616-chr11:76521166..76523251,2	MCF-7	breast:
3	chr11:76520919..76522194-chr11:76629424..76630709,10	MCF-7	breast:
4	chr11:76505701..76507573-chr11:76519620..76521657,2	MCF-7	breast:
5	chr11:76520927..76521861-chr11:76629465..76631202,7	MCF-7	breast:
6	chr11:76520966..76521849-chr11:76547711..76548249,2	MCF-7	breast:
7	chr11:76521066..76521915-chr11:76549449..76550037,3	K562	blood:
8	chr11:76521022..76521927-chr11:76750443..76751131,3	MCF-7	breast:
9	chr11:76518608..76521544-chr11:76522055..76526314,3	K562	blood:
10	chr11:76520767..76521595-chr11:76757203..76758010,2	MCF-7	breast:
11	chr11:76521037..76521914-chr11:76629597..76630398,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000198488	Chromatin interaction
ENSG00000182704	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11236959	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12785994	0.98[EUR][1000 genomes]
rs12791896	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67086560	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897931	chr11:76489673-76540708	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76518800-76521600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr11:76519000-76521600	Weak transcription	Fetal Intestine Large	intestine
3	chr11:76519400-76521600	Weak transcription	NHDF-Ad	bronchial
4	chr11:76521000-76521600	Enhancers	K562	blood
5	chr11:76521000-76521800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:76521000-76522000	Enhancers	GM12878-XiMat	blood
7	chr11:76521200-76521600	Active TSS	Brain Anterior Caudate	brain
8	chr11:76521200-76521600	Enhancers	Hela-S3	cervix
9	chr11:76521200-76521800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:76521200-76521800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:76521200-76521800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr11:76521200-76521800	Flanking Active TSS	Adipose Nuclei	Adipose
13	chr11:76521200-76521800	Enhancers	Brain Cingulate Gyrus	brain
14	chr11:76521200-76521800	Enhancers	Brain Hippocampus Middle	brain
15	chr11:76521200-76521800	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr11:76521200-76521800	Enhancers	Duodenum Mucosa	Duodenum
17	chr11:76521200-76521800	Enhancers	Esophagus	oesophagus
18	chr11:76521200-76521800	Enhancers	Lung	lung
19	chr11:76521200-76521800	Enhancers	Right Atrium	heart
20	chr11:76521200-76521800	Enhancers	Stomach Mucosa	stomach
21	chr11:76521200-76521800	Enhancers	HMEC	breast
22	chr11:76521200-76521800	Enhancers	HUVEC	blood vessel
23	chr11:76521200-76522000	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr11:76521200-76522200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:76521400-76521600	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr11:76521400-76521800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:76521400-76521800	Enhancers	Liver	Liver
28	chr11:76521400-76521800	Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr11:76521400-76521800	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr11:76521400-76521800	Enhancers	NHEK	skin
31	chr11:76521400-76521800	Enhancers	Osteobl	bone
32	chr11:76521400-76522200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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