Variant report

Variant	rs67086560
Chromosome Location	chr11:76518750-76518751
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:76432458..76434385-chr11:76518685..76520926,2	K562	blood:
2	chr11:76489897..76492683-chr11:76518337..76520113,2	MCF-7	breast:
3	chr11:76518111..76519175-chr11:76629549..76632027,10	K562	blood:
4	chr11:76444321..76446462-chr11:76517342..76520030,2	K562	blood:
5	chr11:76518255..76520298-chr11:76572077..76574099,2	MCF-7	breast:
6	chr11:76504952..76506827-chr11:76516420..76519216,2	MCF-7	breast:
7	chr11:76497829..76500317-chr11:76518217..76520054,2	MCF-7	breast:
8	chr11:76516686..76519995-chr11:76522035..76525250,3	MCF-7	breast:
9	chr11:76511026..76513803-chr11:76516270..76519696,3	K562	blood:
10	chr11:76444616..76445153-chr11:76518177..76519095,2	MCF-7	breast:
11	chr11:76518608..76521544-chr11:76522055..76526314,3	K562	blood:
12	chr11:76516373..76518435-chr11:76518489..76520220,2	MCF-7	breast:
13	chr11:76511280..76512868-chr11:76516477..76518831,2	MCF-7	breast:
14	chr11:76517508..76519118-chr11:76629396..76631998,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000261578	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11236959	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12364990	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12785994	0.94[EUR][1000 genomes]
rs12791896	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897931	chr11:76489673-76540708	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76510600-76520200	Enhancers	Adipose Nuclei	Adipose
2	chr11:76510800-76521200	Weak transcription	Spleen	Spleen
3	chr11:76511000-76521200	Weak transcription	HUVEC	blood vessel
4	chr11:76511000-76521400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr11:76511800-76521200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:76513600-76520200	Enhancers	Placenta	Placenta
7	chr11:76514800-76518800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:76516000-76519400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr11:76516200-76520200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:76517000-76518800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:76517000-76521000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:76517200-76519600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:76517400-76518800	Enhancers	Right Atrium	heart
14	chr11:76517600-76518800	Enhancers	Fetal Lung	lung
15	chr11:76517600-76519400	Enhancers	K562	blood
16	chr11:76517600-76519600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:76517800-76519600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:76518000-76518800	Enhancers	NHLF	lung
19	chr11:76518200-76518800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:76518200-76518800	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr11:76518200-76518800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:76518200-76518800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:76518200-76518800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr11:76518200-76518800	Bivalent Enhancer	Fetal Stomach	stomach
25	chr11:76518200-76518800	Enhancers	Lung	lung
26	chr11:76518200-76518800	Enhancers	Pancreas	Pancrea
27	chr11:76518200-76518800	Enhancers	HMEC	breast
28	chr11:76518200-76518800	Enhancers	NHEK	skin
29	chr11:76518200-76519000	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr11:76518200-76519000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
31	chr11:76518200-76519000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:76518200-76519000	Enhancers	Fetal Intestine Small	intestine
33	chr11:76518200-76519000	Bivalent Enhancer	Fetal Muscle Leg	muscle
34	chr11:76518200-76519600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr11:76518400-76518800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:76518400-76518800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
37	chr11:76518400-76518800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr11:76518400-76518800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr11:76518400-76518800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr11:76518400-76518800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr11:76518400-76518800	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr11:76518400-76518800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:76518400-76518800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
44	chr11:76518400-76518800	Flanking Active TSS	Liver	Liver
45	chr11:76518400-76518800	Active TSS	Brain Angular Gyrus	brain
46	chr11:76518400-76518800	Active TSS	Brain Cingulate Gyrus	brain
47	chr11:76518400-76518800	Enhancers	Colonic Mucosa	Colon
48	chr11:76518400-76518800	Enhancers	Colon Smooth Muscle	Colon
49	chr11:76518400-76518800	Enhancers	Ovary	ovary
50	chr11:76518400-76518800	Enhancers	Psoas Muscle	Psoas

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