Variant report

Variant	rs12365092
Chromosome Location	chr11:86309165-86309166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10501627	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10501628	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10898508	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11234707	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11234708	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11494278	0.87[AFR][1000 genomes]
rs11606017	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12790474	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12804997	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1540083	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1541308	1.00[ASN][1000 genomes]
rs1541309	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1541310	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1938922	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4382935	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4944614	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv898057	chr11:86306401-86335459	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86300200-86318800	Weak transcription	Esophagus	oesophagus
2	chr11:86307000-86317800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:86308000-86309200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr11:86308200-86309200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:86308400-86317000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:86308800-86309600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr11:86308800-86312400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:86308800-86321600	Weak transcription	Left Ventricle	heart
9	chr11:86309000-86309200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:86309000-86309400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:86309000-86309800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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