Variant report

Variant	nsv898057
Chromosome Location	chr11:86306401-86335459
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:32)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:32 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:86332654..86334569-chr11:86510961..86513422,3	MCF-7	breast:
2	chr11:86332972..86336293-chr11:86338009..86340844,3	MCF-7	breast:
3	chr11:86332528..86334846-chr11:86511454..86513733,3	MCF-7	breast:
4	chr11:86166796..86167792-chr11:86318880..86319916,3	MCF-7	breast:
5	chr11:86319092..86320819-chr11:86342612..86344114,2	MCF-7	breast:
6	chr11:86319147..86319873-chr11:86387109..86388108,3	MCF-7	breast:
7	chr11:86198460..86199030-chr11:86318943..86319871,2	MCF-7	breast:
8	chr11:86167350..86168564-chr11:86319162..86319856,3	K562	blood:
9	chr11:86317084..86318773-chr11:86517876..86519532,2	MCF-7	breast:
10	chr11:86325316..86328434-chr11:86509886..86513099,3	MCF-7	breast:
11	chr11:86335345..86338144-chr11:86338587..86341664,3	K562	blood:
12	chr11:86166895..86167729-chr11:86320988..86321978,2	MCF-7	breast:
13	chr11:86313579..86315805-chr11:86518203..86520987,2	MCF-7	breast:
14	chr11:86318979..86319867-chr11:86460274..86461251,4	MCF-7	breast:
15	chr11:86165943..86168698-chr11:86319331..86321067,2	MCF-7	breast:
16	chr11:86316921..86319182-chr11:86528850..86531026,2	MCF-7	breast:
17	chr11:86315634..86317627-chr11:86511159..86513045,2	MCF-7	breast:
18	chr11:86319394..86320101-chr11:86373202..86373790,2	K562	blood:
19	chr11:86166955..86167789-chr11:86318883..86320001,8	MCF-7	breast:
20	chr11:86288660..86290609-chr11:86318150..86319919,2	K562	blood:
21	chr11:86318542..86319850-chr11:86528941..86530646,11	MCF-7	breast:
22	chr11:86318927..86319769-chr11:86513386..86514103,3	MCF-7	breast:
23	chr11:86333716..86335655-chr11:86521325..86523278,2	MCF-7	breast:
24	chr11:86319134..86320072-chr11:86529181..86530084,3	MCF-7	breast:
25	chr11:86319149..86319859-chr11:86528932..86529935,3	K562	blood:
26	chr11:86319075..86319750-chr11:86510265..86511089,4	MCF-7	breast:
27	chr11:86318121..86320638-chr11:86509827..86512612,4	MCF-7	breast:
28	chr11:86316496..86321662-chr11:86508610..86513631,11	MCF-7	breast:
29	chr11:86302794..86305608-chr11:86317191..86320162,2	K562	blood:
30	chr11:86330506..86332301-chr11:86511499..86514446,2	MCF-7	breast:
31	chr11:86299094..86301752-chr11:86305764..86307312,2	K562	blood:
32	chr11:86232940..86235698-chr11:86318097..86321251,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCDC81-1	chr11:86333767-86333909	ENSG00000254733.1

No data

Variant related genes	Relation type
ENSG00000150687	chromatin interactions

Extended variants
information (count: 1268 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:1268 , 50 per page) page: 1 2 3 4 5 6 7 ... 26

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12285344	chr11:86306401-86306402	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs150935010	chr11:86306437-86306438	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs560652314	chr11:86306473-86306474	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs116185028	chr11:86306511-86306512	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs140755868	chr11:86306512-86306513	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs192801497	chr11:86306539-86306540	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs149692840	chr11:86306559-86306560	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs146605184	chr11:86306599-86306600	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs115121659	chr11:86306601-86306602	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs531928036	chr11:86306638-86306639	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs11234707	chr11:86306650-86306651	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs574915764	chr11:86306656-86306657	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs537143941	chr11:86306700-86306701	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs578121332	chr11:86306701-86306702	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs113499211	chr11:86306736-86306737	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs577349436	chr11:86306744-86306745	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs546491813	chr11:86306781-86306782	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs537270099	chr11:86306801-86306802	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs553674611	chr11:86306807-86306808	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs572080340	chr11:86306849-86306850	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs571583432	chr11:86306889-86306890	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs541069528	chr11:86306907-86306908	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs560864975	chr11:86306919-86306920	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs529826986	chr11:86306921-86306922	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs543138307	chr11:86306930-86306931	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs114266494	chr11:86306937-86306938	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs184853410	chr11:86306939-86306940	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs199642579	chr11:86306960-86306961	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs545238397	chr11:86306973-86306974	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs4592448	chr11:86307016-86307017	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs528358943	chr11:86307023-86307024	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs548223108	chr11:86307060-86307061	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs80128781	chr11:86307179-86307180	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs537585592	chr11:86307184-86307185	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs56935647	chr11:86307190-86307191	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs544017332	chr11:86307204-86307205	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs145152926	chr11:86307215-86307216	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs146899940	chr11:86307223-86307224	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs539997911	chr11:86307229-86307230	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs553595800	chr11:86307302-86307303	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs188326970	chr11:86307323-86307324	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs542520171	chr11:86307331-86307332	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs11234708	chr11:86307371-86307372	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs191242610	chr11:86307375-86307376	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs553191148	chr11:86307407-86307408	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs185000233	chr11:86307466-86307467	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs189599258	chr11:86307515-86307516	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs532341981	chr11:86307626-86307627	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs545631470	chr11:86307662-86307663	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs139032211	chr11:86307664-86307665	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	21364760	CNVD
Ovarian neoplasms	16753589	CNVD
Breast cancer	16608533	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Sudden cardiac death	19188705	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Developmental delay	21147756	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Ductal carcinoma	22052326	CNVD
small cell lung cancer	20016488	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Attention deficit hyperactivity disorder	22241247	CNVD
Breast cancer	21958427	CNVD
Breast cancer	17133270	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:581 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86297400-86308000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:86298000-86307000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:86298200-86307400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:86300200-86308200	Weak transcription	Fetal Brain Male	brain
5	chr11:86300200-86318800	Weak transcription	Esophagus	oesophagus
6	chr11:86300800-86308800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr11:86301600-86307000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:86302200-86309000	Enhancers	HUVEC	blood vessel
9	chr11:86302400-86306600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr11:86302400-86306800	Enhancers	HMEC	breast
11	chr11:86302600-86307000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:86303000-86306800	Enhancers	NHDF-Ad	bronchial
13	chr11:86303000-86307000	Enhancers	NHEK	skin
14	chr11:86303200-86306600	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr11:86303200-86306800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:86303600-86307200	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr11:86304000-86306600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr11:86304000-86306600	Weak transcription	Fetal Intestine Large	intestine
19	chr11:86304000-86306600	Weak transcription	Fetal Intestine Small	intestine
20	chr11:86304200-86306600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:86304200-86306600	Weak transcription	Fetal Muscle Leg	muscle
22	chr11:86304200-86306600	Weak transcription	Pancreas	Pancrea
23	chr11:86304200-86306600	Weak transcription	Psoas Muscle	Psoas
24	chr11:86304200-86308000	Weak transcription	Aorta	Aorta
25	chr11:86304200-86308000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr11:86304200-86308200	Weak transcription	Fetal Stomach	stomach
27	chr11:86304400-86306600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr11:86304400-86306600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:86304400-86306600	Weak transcription	Lung	lung
30	chr11:86304400-86306600	Weak transcription	Right Atrium	heart
31	chr11:86304400-86306600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr11:86304400-86306600	Weak transcription	Stomach Smooth Muscle	stomach
33	chr11:86304400-86306600	Weak transcription	Spleen	Spleen
34	chr11:86304400-86306800	Enhancers	Muscle Satellite Cultured Cells	--
35	chr11:86304400-86307800	Weak transcription	Adipose Nuclei	Adipose
36	chr11:86304400-86307800	Weak transcription	Ovary	ovary
37	chr11:86304400-86308000	Weak transcription	Brain Cingulate Gyrus	brain
38	chr11:86304400-86308000	Weak transcription	Right Ventricle	heart
39	chr11:86304400-86308200	Weak transcription	Fetal Lung	lung
40	chr11:86304400-86308400	Weak transcription	Brain Anterior Caudate	brain
41	chr11:86304400-86309000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr11:86304600-86307600	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr11:86304600-86307800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr11:86304600-86307800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr11:86304600-86308000	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr11:86304600-86308000	Weak transcription	Fetal Heart	heart
47	chr11:86304600-86308000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr11:86304600-86308000	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr11:86304600-86308200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr11:86304600-86308200	Weak transcription	Colon Smooth Muscle	Colon

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