Variant report

Variant	rs185000233
Chromosome Location	chr11:86307466-86307467
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv3463753	chr11:86302304-86308102	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv898057	chr11:86306401-86335459	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86297400-86308000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:86300200-86308200	Weak transcription	Fetal Brain Male	brain
3	chr11:86300200-86318800	Weak transcription	Esophagus	oesophagus
4	chr11:86300800-86308800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr11:86302200-86309000	Enhancers	HUVEC	blood vessel
6	chr11:86304200-86308000	Weak transcription	Aorta	Aorta
7	chr11:86304200-86308000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:86304200-86308200	Weak transcription	Fetal Stomach	stomach
9	chr11:86304400-86307800	Weak transcription	Adipose Nuclei	Adipose
10	chr11:86304400-86307800	Weak transcription	Ovary	ovary
11	chr11:86304400-86308000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:86304400-86308000	Weak transcription	Right Ventricle	heart
13	chr11:86304400-86308200	Weak transcription	Fetal Lung	lung
14	chr11:86304400-86308400	Weak transcription	Brain Anterior Caudate	brain
15	chr11:86304400-86309000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:86304600-86307600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr11:86304600-86307800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr11:86304600-86307800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:86304600-86308000	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr11:86304600-86308000	Weak transcription	Fetal Heart	heart
21	chr11:86304600-86308000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:86304600-86308000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr11:86304600-86308200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:86304600-86308200	Weak transcription	Colon Smooth Muscle	Colon
25	chr11:86304600-86308200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr11:86304800-86308000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:86306600-86307600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:86306600-86308200	Enhancers	Fetal Intestine Large	intestine
29	chr11:86306600-86308200	Weak transcription	NHLF	lung
30	chr11:86306600-86308600	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr11:86306800-86308000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr11:86306800-86308200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:86306800-86308200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr11:86306800-86308200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:86306800-86308800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr11:86306800-86309000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:86307000-86308000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:86307000-86308000	Weak transcription	Fetal Muscle Leg	muscle
39	chr11:86307000-86308000	Weak transcription	Left Ventricle	heart
40	chr11:86307000-86308000	Weak transcription	Lung	lung
41	chr11:86307000-86308000	Weak transcription	Pancreas	Pancrea
42	chr11:86307000-86308000	Weak transcription	Psoas Muscle	Psoas
43	chr11:86307000-86308000	Weak transcription	Spleen	Spleen
44	chr11:86307000-86308000	Weak transcription	NH-A	brain
45	chr11:86307000-86308200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:86307000-86308200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:86307000-86317800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:86307200-86307600	Weak transcription	Right Atrium	heart
49	chr11:86307200-86307600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr11:86307400-86307800	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links